PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01999 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 534aa MW: 60123 Da PI: 9.6591 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.4 | 5.2e-13 | 12 | 100 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ++++ l+lp kfa+ ++g + +++++l+ ++ W+v++ ++ g+++l++GW++F+ a++L+ g f+v+++ g + l+vkvf+ EMT01999 12 NSLKKLRLPGKFARVFDGHE--PFEVKLREagRRHHLWDVEVVFDAE-GHIYLGRGWEQFAGAHDLRLGHFLVLSYGGChAHAMLTVKVFDG 100 3445599******9999885..566777763266699*****88777.5899************************9777999999999985 PP | |||||||
2 | B3 | 43.4 | 6e-14 | 452 | 534 | 17 | 99 |
E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +l kfa h g k+++++l+l ++rsW kl++ + ++ kGW +F+++n+L+egD ++Fkl ++ + +++v ++r+ EMT01999 452 YLVEKFAGGHpcG--KHRGVELVLLReGKSRSWPTKLRH--SLRGSRVLKGWPSFARDNQLREGDLCLFKLLKSeELLTMMVYIVRR 534 5667777777543..446666666653788*******55..444433446********************88776889999998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.928 | 2 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.76E-13 | 3 | 99 | No hit | No description |
SuperFamily | SSF101936 | 1.57E-14 | 5 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-13 | 5 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.1E-9 | 5 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-11 | 11 | 100 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-11 | 230 | 332 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-10 | 232 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.063 | 238 | 339 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.85E-8 | 238 | 336 | No hit | No description |
SMART | SM01019 | 0.071 | 238 | 342 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-14 | 416 | 532 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-12 | 417 | 533 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-11 | 420 | 533 | No hit | No description |
SMART | SM01019 | 2.0E-4 | 428 | 533 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.9E-12 | 452 | 534 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 472 | 534 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MAFEFFTILL SNSLKKLRLP GKFARVFDGH EPFEVKLREA GRRHHLWDVE VVFDAEGHIY 60 LGRGWEQFAG AHDLRLGHFL VLSYGGCHAH AMLTVKVFDG SMCRRDYQND NDASSGSSGD 120 SGNTLFLTMY MVRLLGQQGA EGEGEVPPQT EAEEGDGEQG VSKMSNPCDS DGSQKGRSYS 180 SEKLSAEDSL FVDNSVASAN LQTLSCNYVL STQCYLTKAQ KVKIDALMEK IQPKFTVLVV 240 QMKKSNVKQH ATLIIHKDYA LKHFPCEDTT VILQLPGKNK DWKCTFRIRP SGTSDAGRRN 300 LFLYNFAYDN HIREGDICLF QPITNVKQRT FIVTVHVLHK VSIDHYAGGR TDIGSNHGRK 360 RAKMGAVKDK PRTDGEEHKI SEDSEGASEG LFMLSNGVCL TPAQRMKLLK IVKKIKFKPP 420 FYVAIMSKST VCQRGSQNNP MLRFGSQYAT RYLVEKFAGG HPCGKHRGVE LVLLREGKSR 480 SWPTKLRHSL RGSRVLKGWP SFARDNQLRE GDLCLFKLLK SEELLTMMVY IVRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-156 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198708.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | N1QU52 | 0.0 | N1QU52_AEGTA; B3 domain-containing protein | ||||
STRING | EMT01999 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-07 | B3 family protein |