PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EMT01440

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

CPP

Protein Properties

Length: 283aa MW: 31970.9 Da PI: 8.0246

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT01440	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.9	1.2e-14	12	49	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C Ckks+Clk+YC Cfa g +Cse+C C C+Nk EMT01440 12 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCVPCFNKA 49 89**********************************97 PP
2	TCR	50	6e-16	73	109	3	39
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedCkN EMT01440 73 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 109 589*********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.4E-14	10	51	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	28.527	11	111	IPR005172	CRC domain
Pfam	PF03638	3.1E-10	13	48	IPR005172	CRC domain
SMART	SM01114	6.5E-15	71	112	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-11	74	108	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MRQKVEDAAD GCKHCACKKS RCLKLYCPCF AGGGYCSEKC GCVPCFNKAD FAETVQTTRK 60 EDAHNSSSST PPRRGCNCKK SSCLKKYCDC YQDGTGCSLF CRCEDCKNPY GKNEGFMADE 120 SKRFIYTGAD LDHSEDEHDF IVERSPRLQS PISKESSFQH TPPRSKASSR DTHLLPQVLS 180 QWQPRSWQQS SKRQGNDHRA IDDSGDNHKS SSHEWQLAKH QVQEDAYSIS RCVQILNGMV 240 ELSQVEKSVA PDVFLQPGNR EIFVSLGLDV RALWLKRKIQ HLT

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367866	0.0	AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBank	AK374557	0.0	AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157750.1	0.0	protein tesmin/TSO1-like CXC 3
Swissprot	Q8L548	1e-34	TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBL	N1QSR0	0.0	N1QSR0_AEGTA; Uncharacterized protein
STRING	EMT01440	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10159	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	5e-37	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]