PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01422
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 714aa    MW: 81871.6 Da    PI: 6.8611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01422genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-15155238597
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               l  s+++k++ +++p  f  ++ ++  ++++++l+ +sg++W v+l   k sg+  +++GWkeF ++n++  g  +vF++dg+s+f   v+vf
  EMT01422 155 L-ISYSFKEH-VTIPVGFH-KYLED--CTRMVSLRGPSGNKWPVEL--AKISGELRFARGWKEFLSDNRIGYGYLLVFRYDGQSQF--SVTVF 238
               4.47888888.9******8.67544..8889***************..**********************************9999..66655 PP
2B331.92.4e-106206932093
               HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
        B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
               kk ++++   ++es+++tl d++ + W+v + y+++ +    +++GW   + +n+L+  D++vF+l ++  + +l+
  EMT01422 620 KKLLRTFH--PRESTKMTLWDPQAKPWKVWYEYTGGECPrAAFSAGWGALAMENNLEKWDVCVFELLDQeYNIKLH 693
               55555554..56899****************99555554599***********************87542444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-20144242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-19146243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337149241IPR003340B3 DNA binding domain
CDDcd100175.12E-16149238No hitNo description
SMARTSM010199.0E-9152241IPR003340B3 DNA binding domain
PfamPF023622.6E-12156237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-8560618IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-7567618IPR015300DNA-binding pseudobarrel domain
CDDcd100171.87E-17570694No hitNo description
SMARTSM010193.7E-7572698IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-11619687IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-12619694IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.629619698IPR003340B3 DNA binding domain
PfamPF023621.2E-7619691IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MGMVDNKQNV KVKEEEDENL NTKEKRKQNK AEGGKKAEEK QNSSKRKMDK NREEKEKKTR  60
VVDKKDDEEK EREDRRKRKE NEKKVKSHRE RKEENENEKE EQGQQEIEKE KVEEQKEINK  120
QKGRKENDKE EEDSKERDEK DQNDKKNCPH FFRALISYSF KEHVTIPVGF HKYLEDCTRM  180
VSLRGPSGNK WPVELAKISG ELRFARGWKE FLSDNRIGYG YLLVFRYDGQ SQFSVTVFLP  240
SSCEAPYAFL AQPQRKDVDV AGEEEKGLMS TNVDGTVLQG EDVHTGTSAD GTPQNEALEE  300
DASEDEEVEE VEDALSETPE NKEDSECRMC SDDALEPAQQ QQGDLRKTDD GFVLGKRARF  360
RKVDDIMAEV DRSKKSKPVE RKNSEGPSGD LASEGAASSD SLAEESEHRP PKESKAEVIR  420
SPSSDSPSKA ATSSDNFAEL DSRPSKESKA EGKSSVGPLV VYTRPSTSAS KRLPLKKASE  480
ETISSDNLAG VFAPESVCTD LTMWHNSFGK RLSKQNQFPM FNKSNGENQP GRVLIKVMRR  540
SGLTSQRRPV TQREKEYAME RAQRFKSERP FTVKAMKHND VYASYFMIIP DKFVKTFLPK  600
ESRKMTLWDP QAKPWKITPK KLLRTFHPRE STKMTLWDPQ AKPWKVWYEY TGGECPRAAF  660
SAGWGALAME NNLEKWDVCV FELLDQEYNI KLHVQKVVLM ITPCILAPKP RTNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16978KEREDRRKRK
27479RRKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731480.0AK373148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169976.10.0uncharacterized protein LOC109755480
TrEMBLR7W2I60.0R7W2I6_AEGTA; B3 domain-containing protein
STRINGEMT014220.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2264526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-14B3 family protein