PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01357 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 44061.1 Da PI: 8.256 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.7e-06 | 14 | 35 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ff+ G C G+ C F+H+ EMT01357 14 VLCKFFMH-GACLKGEYCEFSHD 35 79**8888.*************5 PP | |||||||
2 | zf-CCCH | 27.9 | 4.1e-09 | 43 | 63 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f++r G C+yG+rC++ H+ EMT01357 43 VCTFYQR-GSCSYGNRCRYDHV 63 5999999.*************7 PP | |||||||
3 | zf-CCCH | 21.7 | 3.5e-07 | 174 | 196 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa++G C+yG+ C+ +Hg EMT01357 174 MPICS-FAAGGNCPYGEECPHMHG 196 68999.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.591 | 10 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-7 | 11 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-4 | 40 | 64 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 40 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 43 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 43 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 171 | 197 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.76 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 174 | 196 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.3E-12 | 229 | 304 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.1E-9 | 233 | 299 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 8.06E-4 | 239 | 299 | No hit | No description |
Pfam | PF13639 | 3.8E-7 | 239 | 298 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 2.9E-7 | 240 | 297 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.297 | 240 | 298 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 264 | 273 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.01 | 327 | 355 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.648 | 327 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016874 | Molecular Function | ligase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MFLRGRGAHG SNKVLCKFFM HGACLKGEYC EFSHDWSDQA NNVCTFYQRG SCSYGNRCRY 60 DHVKVSRNNP VPPLPSSSTA TRNSPVRLPP SSSTATHVAS TSPQLLSSGR PLHLGHQTNS 120 SNQRQQISMD KLAVSESKPA WRNEVQLDSV SEDGIGWSSI QTAQNQTSMK LADMPICSFA 180 AGGNCPYGEE CPHMHGDLCA FCGKMCLHPY RPDERQEHIK LCEKNHKRLE ALKRSQEIEC 240 SVCLDRVLSK PTAAERKFGL LSECDHPFCI SCIRNWRGNS PTSGMDVNSA LRACPICRKL 300 SYYVIPSVLW YFSKEEKLEI TENYKAKLKS IDCKYFDFGT GTCPFGTSCF YKHAYRDGRL 360 EEVVLRHLDC DDGSTLIAKN IRLSDFLGRL HL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248188 | 0.0 | AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148371.1 | 0.0 | E3 ubiquitin-protein ligase makorin-like isoform X3 | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | R7W2E7 | 0.0 | R7W2E7_AEGTA; E3 ubiquitin-protein ligase makorin | ||||
STRING | EMT01357 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-144 | C3H family protein |
Publications ? help Back to Top | |||
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