PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT01348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 25547.1 Da PI: 6.6815 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ EMT01348 70 RGNFSEEEERLIITLHAGLGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.52E-5 | 6 | 36 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.622 | 10 | 61 | IPR017877 | Myb-like domain |
SMART | SM00717 | 15 | 14 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-8 | 16 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.99E-16 | 57 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.779 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 72 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDKTLVEHI QKRGGNVGSR RGPPHTGRVY RRGEDRPLRW 60 TNSPRSDIKR GNFSEEEERL IITLHAGLGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDQTNHD TERERQYAAF ARFEARRRGR HEGGIVVLED SDDDDDAPPP 180 PVRHGDVGEG SSRGGRTIKK EKADDSEEDD GDVGDWARLI EFFAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-21 | 13 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169251.1 | 8e-85 | myb-related protein Zm38-like | ||||
Refseq | XP_020179028.1 | 8e-85 | myb-related protein Zm38-like | ||||
Swissprot | Q9S9Z2 | 3e-49 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | R7VZI6 | 1e-164 | R7VZI6_AEGTA; Transcription factor MYB39 | ||||
STRING | EMT01348 | 1e-165 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 6e-53 | myb domain protein 9 |
Publications ? help Back to Top | |||
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