PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT00562
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 336aa    MW: 35847.9 Da    PI: 8.203
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT00562genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.91.7e-22120180259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
               +Dg +WrKYGqK ++ s++prsYYrC+++   gC+++++v+ s+++p+  +i Y g+H+++
  EMT00562 120 NDGKTWRKYGQKYIHASTNPRSYYRCSHKpdqGCQATRQVQESDSNPSEYIISYYGQHTCK 180
               89**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24105182IPR003657WRKY domain
SuperFamilySSF1182901.57E-23112182IPR003657WRKY domain
PROSITE profilePS5081121.586114182IPR003657WRKY domain
SMARTSM007743.8E-29119181IPR003657WRKY domain
PfamPF031061.1E-21120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MATCGGAGDD GGRSPLAVVY DELVEVRQHA ATLQTMLQGS PRVSDMDARE LVKGMMAKLS  60
SAMSVLGTTS GGVEASSGAV RGPGRRKKRS GTASGPHRES TSRRRSKSPF INMVTARTLN  120
DGKTWRKYGQ KYIHASTNPR SYYRCSHKPD QGCQATRQVQ ESDSNPSEYI ISYYGQHTCK  180
DPSTFRSLVI QGAADAAPPE DCSNLISFTS INGAFAHRVV KEAVDLHPIP YSRFSNYSSS  240
PPVQEGMSSG SLSPAGHGKF MQYAGGQLVD VIGRRTPPLT VGSAPVEYWP VVGVADDMDA  300
GAGMDSFPSS PSSLGFMSGG SFGNNIYDDD LFGFDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22112180169OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509040.0AK250904.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf95l16, mRNA sequence.
GenBankAK3711330.0AK371133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2126B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181741.10.0probable WRKY transcription factor 34
TrEMBLA0A1D5V1P30.0A0A1D5V1P3_WHEAT; Uncharacterized protein
TrEMBLR7W1J30.0R7W1J3_AEGTA; Putative WRKY transcription factor 46
STRINGEMT005620.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-22WRKY DNA-binding protein 46