|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
EF517601.1_FGP010 |
Common Name | LOC100382800, rf1-C1-g2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
Family |
GeBP |
Protein Properties |
Length: 399aa MW: 42173.1 Da PI: 4.712 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EF517601.1_FGP010 | genome | MaizeSequence | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 98.3 | 7e-31 | 87 | 186 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkif 89
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g+ ++f++ h+ i+
EF517601.1_FGP010 87 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFEFTKSQLIEKLRRLKKKYRVCAARvAAQGDAFAFRSVHEGAIY 178
79************************99877778*************************************998899*************** PP
DUF573 90 elskkiWg 97
++++ iW+
EF517601.1_FGP010 179 DVARHIWR 186
*******8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MADHDPRAAA ASSSAGGDED DEGTDTDVSD SNLGNPQGQD PLPFPDAAWV PPHPLAPAHE 60 PAGALPPPLP QGPSAGASAT TDDSRRLFQR LWTDEEELLI LRGFLDFTAR RGTTFASHQY 120 DTGPFYEEIR RRLSFEFTKS QLIEKLRRLK KKYRVCAARV AAQGDAFAFR SVHEGAIYDV 180 ARHIWRPAFR RGEGGGAADA SDEDDINPVA AAAMEDGGGG SASTPVPTAR GRGGRCVRRR 240 TAQELEAPAL PATSALLLSD AAEDRHVVAV ENLAPPPPLQ VPTVSLTGAT PSPMPVCTGG 300 AAEEAIKSIM SPLLKEFINS VAVGGQSGFG LGLGTGFGGI GGFDILGLGT GVPGPNPGMP 360 SDDKWRQQQI LELEVYLKRI ELVREQVTAA LEDLRSSEG
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT065406 | 0.0 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT3G04930.2 | 2e-33 | DNA-binding storekeeper protein-related transcriptional regulator |