PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0489s00008.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family MYB_related
Protein Properties Length: 520aa    MW: 54713.5 Da    PI: 8.8772
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0489s00008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-154486145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                          + +WT+ E+ l+v+a+  lG++ W+ Ia+ +  gR+++ +k++w+
  Dusal.0489s00008.1.p 44 KEAWTPHEEALIVQAHMVLGNR-WSEIAKSIA-GRSENAVKNHWN 86
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071768140IPR001005SANT/Myb domain
PROSITE profilePS512949.401138IPR017930Myb domain
CDDcd001670.00109138No hitNo description
Gene3DG3DSA:1.10.10.603.0E-13247IPR009057Homeodomain-like
SuperFamilySSF466893.05E-232292IPR009057Homeodomain-like
PROSITE profilePS5129421.573993IPR017930Myb domain
SMARTSM007173.6E-144391IPR001005SANT/Myb domain
PfamPF002491.1E-124486IPR001005SANT/Myb domain
CDDcd001671.30E-104689No hitNo description
Gene3DG3DSA:1.10.10.601.2E-184892IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGEGNWSPIA RVLNEATGKD DMHGRIGKQC RERWNHHLKP GINKEAWTPH EEALIVQAHM  60
VLGNRWSEIA KSIAGRSENA VKNHWNATLR RRDVLDAEPG PLKIYMLQNN ITGSQKGSSG  120
ILQCSKKTGG KGSKGGSKTA GPGTPRKRAA QRRDEEEDFS DGGSTTPDED AASGSSVRAG  180
PVQGAEGCSS MLLDRCPGLS LHMQGLVGGG LPWGGQHLNW TQNLPFGGLG FNGFHGAFQG  240
ITPPPLLSPF LSLPPFQNHH ATMLSSSRSR PSSHLTPQPR HAPLRPPPGT TQAFGSVDAK  300
GSLKGEMDPD AAPVWPGLPA LSRPAGVAAV GAAAGSTTGA AMHTSQGSNA ACLEQHSAQL  360
LPRLPRLQSC SHAHLYLMQQ QQQQYLHQAV PLPAAFLDAP CSLPDARPLP SLSSSMHPGS  420
QPVCTGGTSS ISPRAMAHGQ QALPVPRQSA VGKQPFKQCR SDAGPLCTLP PHPPASSASL  480
GDEGTGNRGG APWREAGEES EEDVSQALLP QLRQVRMVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2729226107B-MYB
1gv2_A2e-2729223104MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-2729277158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-2729277158MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-2729246127MYB TRANSFORMING PROTEIN
1mse_C2e-2729223104C-Myb DNA-Binding Domain
1msf_C2e-2729223104C-Myb DNA-Binding Domain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.17e-27myb domain protein 3r-4