PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0433s00010.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family NF-YB
Protein Properties Length: 154aa    MW: 16569.7 Da    PI: 6.2635
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0433s00010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1695.7e-5310104296
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +eqdr+lPian+srimkk+lP+naki+kdake++q+cvsefisf+tseasdkc rekrktingddllwa++tlGfe y+epl++yl+k+
  Dusal.0433s00010.1.p  10 HEQDRYLPIANISRIMKKTLPGNAKIAKDAKEITQDCVSEFISFITSEASDKCLREKRKTINGDDLLWAMSTLGFESYMEPLRLYLQKF 98 
                           69*************************************************************************************** PP

                 NF-YB  91 relege 96 
                           r++e+e
  Dusal.0433s00010.1.p  99 RHAEAE 104
                           **9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-519115IPR009072Histone-fold
SuperFamilySSF471135.43E-3812115IPR009072Histone-fold
PfamPF008083.8E-261579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-204361No hitNo description
PROSITE patternPS0068504662IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-206280No hitNo description
PRINTSPR006151.8E-208199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAESGGGASH EQDRYLPIAN ISRIMKKTLP GNAKIAKDAK EITQDCVSEF ISFITSEASD  60
KCLREKRKTI NGDDLLWAMS TLGFESYMEP LRLYLQKFRH AEAEASNKGD PKKDAAHPSF  120
LQANPQGMVP AGFMPQSGAT SASAGLEEPS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-461099392NF-YB
4awl_B2e-461099493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-461099493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8691141e-157KP869114.1 Dunaliella salina nuclear factor Y B subunit (NF-YB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182576.15e-57nuclear transcription factor Y subunit B-2-like
RefseqXP_020182577.15e-57nuclear transcription factor Y subunit B-2-like
SwissprotP252097e-55NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A0K2GUN61e-102A0A0K2GUN6_DUNSA; Nuclear factor Y B subunit
STRINGXP_002949581.13e-56(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20231616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-57nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]