PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0407s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family CPP
Protein Properties Length: 551aa    MW: 57020.6 Da    PI: 8.7234
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0407s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.1e-153572442
                   TCR  4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                          k+CnCk+s+Clk+YCeCfa+g++C++ C+C+dC N++e+
  Dusal.0407s00002.1.p 35 KHCNCKNSRCLKLYCECFASGRYCEN-CSCKDCLNNQEN 72
                          89***********************9.*********986 PP
2TCR53.64.3e-17117156140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgCnCkks ClkkYCeCf+ag++Cs++C+C +CkN e
  Dusal.0407s00002.1.p 117 KHSKGCNCKKSACLKKYCECFQAGVFCSSSCRCMECKNYE 156
                           589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.0E-143272IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.57333157IPR005172CRC domain
PfamPF036389.6E-113569IPR005172CRC domain
SMARTSM011143.7E-18117158IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.7E-13120155IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDPSGNLLPL LSCVPVFLGG SPRSGVLPQQ GAPGKHCNCK NSRCLKLYCE CFASGRYCEN  60
CSCKDCLNNQ ENESKRQPAV DSILERNPHA FRPKIQAQAE VVIPSHTSPP VIDAVGKHSK  120
GCNCKKSACL KKYCECFQAG VFCSSSCRCM ECKNYEGSDQ RAQVIACLNM PHPSSAEHGA  180
GSGKGPFAAS APGVAASTST SSHPRPATSP PHKRARTAAA APPPQPFNPS LLGNALAGAA  240
LPPGLPFYLP PMPSLPTSSP PAARPIPALS VPLPIKAPTP SGRPQPPPAA PASTASAVPA  300
SSAPPVPSAT GASHPAAAAQ PQKWPLLHQA RFEAQERVVL EEFLSTLKKI LAAADQQVAE  360
LQAASKQQRQ PQPNQPPHSI PTPPPAAQPT ATQSPADGNF VPAPPLAPQP TTSQLPADGN  420
FVHQRQSQHG SPGKPSKSTA PPLALPLELP APRGLLPGVP MARQAPPPPV ATPGLHFTQP  480
PPRLGTSQGQ GEGLSQGQGQ QQQQQPHHQG EQIACTHPPA GVDPATVAVA LQGQRQGQQQ  540
GDTTNEQPGG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-323316510131Protein lin-54 homolog
5fd3_B8e-323316510131Protein lin-54 homolog
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.12e-49Tesmin/TSO1-like CXC domain-containing protein