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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dusal.0336s00015.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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| Family | GATA | ||||||||
| Protein Properties | Length: 683aa MW: 72204.4 Da PI: 8.294 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 49.1 | 7.7e-16 | 82 | 116 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgt+++p+WRr + +++ LCnaCG+y+ ++++
Dusal.0336s00015.1.p 82 CANCGTKDSPQWRRPSTKKIVLCNACGIYFSRHNT 116
*******************************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50114 | 12.796 | 76 | 115 | IPR000679 | Zinc finger, GATA-type |
| SMART | SM00401 | 1.5E-11 | 76 | 127 | IPR000679 | Zinc finger, GATA-type |
| Gene3D | G3DSA:3.30.50.10 | 6.7E-13 | 79 | 127 | IPR013088 | Zinc finger, NHR/GATA-type |
| SuperFamily | SSF57716 | 5.7E-11 | 79 | 125 | No hit | No description |
| CDD | cd00202 | 3.39E-12 | 81 | 116 | No hit | No description |
| Pfam | PF00320 | 2.5E-12 | 82 | 116 | IPR000679 | Zinc finger, GATA-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 683 aa Download sequence Send to blast |
MECSMEGPSR THALLETVRK LLEMQHEEEE IPTVKGGLCE ESTFAQESLC SGATPTAEEL 60 IVAVPTNKKR SVQRQGVPGG PCANCGTKDS PQWRRPSTKK IVLCNACGIY FSRHNTLPQR 120 SSNNSSSSNK KKTSSAVPAQ VPQVQATQDV GNESAGGEDE AITAAGPTHH MALLQQAACA 180 AAAANEGPYT RRPSSHSNTS QTDVINMSQS SRRSSPSRPS QEEDEVMLDN LPAPPAAAVK 240 QEDAAAAHSQ SSTQQPVPIP AVPSRKRSLR AGSTSAPTST PTASATNPTF SAPNAPPPPQ 300 APAFAAHPQP WGPHPSQLLL LQQQQQLLHM RLLGGAFPTP PNPYLMRILA STPPHPQLLA 360 SQQSAHLPSL HHHMQQHQHA LVLHHVHQMQ QQQLHALGGL AHLSSVYTPH GAGLLGRGST 420 GVARGSEAGL SAPTAQQPSA HSRSASREEP IAASLVPPVS VQCQQQQRQQ LHRLITTQPP 480 AWPALPLTEY GNASPHLQQQ QQQQQQQSQQ QQRGADANSR AAQVVEGQAA VTCHLLSPSS 540 QQLLQQQLPQ QQSEEEKEDA ADVQQRLLEP AAKRHQRQGS FGSGPEGATS STAAHTMTTQ 600 GGQGGHSLKV IPSYACRGPR AVSASDATSS VAALQQQQLQ QQLLQKRMAP TAPLLAAGGG 660 GNGSGTAVST MYRPAPCALS DC* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP450 | 15 | 26 |
| Link Out ? help Back to Top | |
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| Phytozome | Dusal.0336s00015.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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