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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dusal.0278s00002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
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Family | MYB | ||||||||
Protein Properties | Length: 949aa MW: 105904 Da PI: 7.8263 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 10 | 53 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W Ede+l+ av ++G ++W++I++ + ++++kqck rw+ +l Dusal.0278s00002.1.p 10 WKNTEDEILKAAVMKYGLNQWARISSLLV-RKSAKQCKARWFEWL 53 9999*************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 31.8 | 3.2e-10 | 60 | 102 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ + Dusal.0278s00002.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPAQCLDRYERL 102 68*****************99.********8..*********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.189 | 2 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-13 | 6 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 9 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-10 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 1.9E-12 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 5.03E-21 | 33 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.673 | 54 | 107 | IPR017930 | Myb domain |
CDD | cd11659 | 5.59E-31 | 55 | 107 | No hit | No description |
SMART | SM00717 | 1.6E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-14 | 61 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF11831 | 8.6E-11 | 376 | 477 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Pfam | PF11831 | 2.8E-8 | 557 | 630 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MRIQIKGGIW KNTEDEILKA AVMKYGLNQW ARISSLLVRK SAKQCKARWF EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPAQCLDRYE RLLDMAVSKE DKYDPADDPR 120 RLRPGEIDPN PESKPARPDA VDMDEEEKEM LSEARARLAN TQHGRTSQKR QHKWECQTKR 180 KRTINYNAEV AFERKPAAGF FETAEEEARS KALQQPSDSC LATGPCIIII IITITNHAAG 240 EEWKGKVDEL LMSFIVASSC NGACHLSTDI NCANMSNVAQ HLFAAPEAAA KLAELNDPVM 300 VRRRGKMMLP TPQVSETELE QIARMSTEQL LEDGVTEGAG GDATRHLLGQ YGPTPLRAAS 360 TAATPARTAP HGDRIQQEAQ NLMRLTALQR GLPRPLTLDL LPHGRPAHEQ PKLSLRERAE 420 DMLKEEMLTV LAHDASKYPI VIKEGKKVGR QAGEGGESAV FIVNIRKRAE DMLKEEMFTR 480 LAHEVSKNPV IMKEGEKGCG RARSYVLKEE MLTVLAHHAS KHPILTKEGK KGMLEVEMLT 540 VLARDASQYP IVIKEGKKVN EEVHTVLAHD ACEYPIVIKE SKKAKHAALA AAAAAPPLEE 600 LEASALEAAA AMLRAETEFV VGAMGHASTP LNCCFALFKD SCLQVLPYCY AILISCIHAA 660 CSPSPGDHCT FIELLLLTCF QTTPMPSSSR HLRARNLCST PPDDYIATWD TVRKDLMWVP 720 GKQKADRVAS STPGERIEAT KVGLDPSPVR MSGLVVGLGV SSGGQIDCGG NNPKFKKFAL 780 ILWVLKFFDL KNWLVMFVQA QCELCYVLRP SWCMLQPKRA NACCIYFCML FQHSHAFEAA 840 RGEMEREAKR AAKIEQKVGI LVNGLQQRDA RLREQADRAW AALQQELVNL ACFQALYERE 900 KLAAPDRIEQ MLHLVSEQRE REKALQERCG SLMADHMELS NALSKIDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
5xjc_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
5yzg_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
5z56_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
5z57_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
5z58_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6ff4_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6ff7_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6icz_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6id0_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6id1_L | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
6qdv_O | 1e-100 | 2 | 396 | 3 | 387 | Cell division cycle 5-like protein |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1040 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 5e-99 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Dusal.0278s00002.1.p |