PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0228s00018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family HSF
Protein Properties Length: 229aa    MW: 25156.4 Da    PI: 8.9626
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0228s00018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33251162102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d+++++++ w + + sfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+
  Dusal.0228s00018.1.p  25 FLTKTYELVDDPSTNSVVPWGSGNASFVVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVNPDS---------WEFANDHFIRGR 104
                           9****************************************************************998.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           ++ll+ i+r+k 
  Dusal.0228s00018.1.p 105 RDLLRXIHRRKP 116
                           *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3621114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-3421114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2925114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTNRHNGHYY QDGPSGVAGG GVPPFLTKTY ELVDDPSTNS VVPWGSGNAS FVVWKPPEFA  60
RDLLPKHFKH NNFSSFVRQL NTYGFRKVNP DSWEFANDHF IRGRRDLLRX IHRRKPASTG  120
GAHAGSIPPP TMMPPGQTAI EEGGKALFSS SPPTPPHLWY EALQMQSLFD LHALIYMPFL  180
RLAPTNLWHK PSICSLYLTL LMVLQGTAEA SSSPPPPVAG IPEDAALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-251311417129Heat shock factor protein 1
5d5v_B8e-251311417129Heat shock factor protein 1
5d5v_D8e-251311417129Heat shock factor protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.19e-47heat shock transcription factor A1D