PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dusal.0205s00002.1.p
Organism
Dunaliella salina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Dunaliellaceae; Dunaliella
Family C3H
Protein Properties Length: 882aa    MW: 89566.1 Da    PI: 7.2507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dusal.0205s00002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07215237326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +e C++f+r G C +G+ Ck++H 
  Dusal.0205s00002.1.p 215 QEVCHDFLR-GRCDRGSACKYSHN 237
                           689******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.90683110IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-683109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-683108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-584108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.826117145IPR000571Zinc finger, CCCH-type
SMARTSM003560.83118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244172199IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5173198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516212239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5212237IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5213238IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5215237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4216239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MMSDEVNLAS PFPGHEDCLG LSGIVWDGGG GDSGDNLATL TGSLDSILGS SQTPHAPASG  60
ASTATSSRRG TLERGEAGQD GANSKDEICF DFTKGLCTRG DKCKFTHDLA TIVSVNSREK  120
GICFDFLRPS GCHRGLLCRF SHDLSSIQQQ CAQQSAQSGC SEGAQASSAG GKTNKAICFD  180
FVKGVCERGP DCRYSHDLSL IARTGRGGPQ NQKTQEVCHD FLRGRCDRGS ACKYSHNTSL  240
LAPPPPSSTL PLAASAPHPS RPYNFSPDGL PLDLLDPAML GGPPGSPPIA ASHPMHHPGP  300
PAALFGGHPL GGGGAGAMPG VGLRGPPAAA AAAALLGGAA IPPLPHHPWG PGPPAAHHVP  360
FLPMHRASGY EPSIPLHLQH PGSYMRHHPH HPHPLHHPQG HPHDSAALAH SHAAVLRHLA  420
VLQQHNQLAA AAASSAPFQP PLYPMPSPMA PPPAPGSHPW LADAVAAKAA ASQPSPMREK  480
GTHAGAAVAA AAAAHPPQQP SLLPQPERAP LGAQRDMSNT LQPKQPERTP LKALRDASNT  540
PQPQQQERAP LGALRDVSNT LHQHPSSNTP AANQKLQQNG ATTAKAAGAT AKKSGHKASA  600
GPAATESAPV SRLGSYSSSN SSSVMGSLRT ASPFPDAAAV APAESSGDVG VGSIADAPLP  660
PTATAISPPL AHGAAAPFSS APLTREGRGP AVWPLPHAAP HAAPRLLGNS TAGGDGIGVA  720
NGGGSPLSVE AISAALAGVG NDPRALAHAL SSLAAMVQAQ AESASSPSVG QHQGPLIQQH  780
LARFLGASPA VDDDLLGAKD QQLCGPPPPA PLHAFATGFG RDDYSSSPLA GYGDGPLSIS  840
PSQNPLLPVS CTQKADADAG DDGFTSLAPD LLPLLQEIWN K*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314