PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do029743.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C3H

Protein Properties

Length: 97aa MW: 11359.2 Da PI: 10.3924

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do029743.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	61	81	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ +G C +Gd C+F+H+ Do029743.1 61 CHNYKNNGMCIRGDGCRFSHV 81 ********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.944	55	83	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	59	81	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	61	80	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
RLPTLGRREN ALWQKRGKIK RRQISASSPM ILHLQQNLCP ATILRVSSCL KGDDIPYDQS 60 CHNYKNNGMC IRGDGCRFSH VVYVNYRRYF QTRCKDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	22	RRENALWQKRGKIKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do029743.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5VB48	2e-66	A0A1E5VB48_9POAL; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43