PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029461.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 17892.3 Da PI: 9.4009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.3e-05 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Do029461.1 29 YPCSFCKREFRSAQALGGHMNVH 51 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.85E-6 | 26 | 55 | No hit | No description |
SMART | SM00355 | 0.007 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.6E-7 | 29 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MERESKQQPW SYSSCGGFMA SFTWPPRSYP CSFCKREFRS AQALGGHMNV HRRDRARLRH 60 GGSPPLPLPL PLPAPAAAGH HGAAASPCRP RAPAPAVMIP NLNYPPPPPP SSSKKHDKRP 120 EVSLELGFGV VCSFSGPSAA AATATPTPGG SPPPEDDGGL DLELRLGVSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 24 | 51 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 24 | 51 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029461.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804370.1 | 3e-44 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A1E5UI84 | 1e-117 | A0A1E5UI84_9POAL; Uncharacterized protein | ||||
STRING | Si019050m | 7e-39 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 3e-23 | C2H2 family protein |