PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do029043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20332.5 Da PI: 7.8337 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.5e-16 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qky Do029043.1 115 PWTEEEHRLFLEGLEKYGRGDWRNISRQSVKTRTPTQVASHAQKY 159 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.5E-4 | 22 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-6 | 24 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.58E-11 | 24 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-4 | 25 | 72 | No hit | No description |
PROSITE profile | PS50090 | 6.795 | 25 | 72 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 21.14 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-18 | 110 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-17 | 112 | 163 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-12 | 112 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 114 | 158 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.92E-11 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 1.2E-12 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAFYYGVSGQ SSSSAAAWGA PSSRPWTKAE DKVFEGALVL FPENVPNRWV LVASQLPGRT 60 AQEAWDHYQA LLADVDLIER GMVETPDSWD DDAAAGEERA GAGRGRGGER RRGVPWTEEE 120 HRLFLEGLEK YGRGDWRNIS RQSVKTRTPT QVASHAQKYF IRQASAASRS DGKRKSIHDI 180 TTP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do029043.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971405 | 1e-118 | EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961933.1 | 5e-94 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-52 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1E5UZ20 | 1e-131 | A0A1E5UZ20_9POAL; Transcription factor DIVARICATA | ||||
STRING | Si023363m | 2e-93 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-46 | MYB family protein |
Publications ? help Back to Top | |||
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