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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028825.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 726aa MW: 79103.4 Da PI: 7.7266 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 52 | 102 | 5 | 55 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 ++t+eq++eL++++e++++p+ ++r+ L +k+gL+ rqV++WFqN+R+++ Do028825.1 52 KRHTPEQIQELKAAYEQCHHPDDKTRRALGAKIGLEARQVQYWFQNQRTQM 102 579*********************************************986 PP | |||||||
2 | START | 103.7 | 3.1e-33 | 212 | 445 | 3 | 205 |
HHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEEEEEECTT.. CS START 3 aeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla...kaetlevissg.. 88 ae+ +++++ +a+ +ep+Wv + e + ++++ +k + + + ea r+ g+v +++a+lv +l + + +W+e+++ + t i sg Do028825.1 212 AEASMEQFLMLATQGEPLWVPTPdgEVLSYQVYQKKMFPVEHavcpqgFVREATREAGMVRGTAADLVGILTNAN-RWSEMFPgvvAGVTAGDIVSGgi 309 68999******************8877888888888777655899999999************************.*******877555555555557* PP .....EEEEEEEEXXTTXX-.SSXEEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.........-TTSE.....E-EESSEEEEEEEECTCEEEEEEEE CS START 89 .....galqlmvaelqalsp.lvpRdfvfvRyirqlgagdwvivdvSvdseqkppe........sssvv.....RaellpSgiliepksnghskvtwve 168 +qlm+ael + sp l++R f+Ry++ + +w+++dvSvd +p+ + vv ++llpSg+l+e+++ng++kvtwv Do028825.1 310 ftsrdRLIQLMNAELWVQSPrLRNRSMNFLRYSKLTADRRWAVMDVSVDGILEPEGshkidlnvDNAVVpafhkGCRLLPSGCLVEDMGNGYCKVTWVV 408 **999**************95667*************************9999986322222222222233333489********************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 h+++++ +++ ++r+l +sg a ga +w+a lqrq+e Do028825.1 409 HAEYDETTVPTIFRPLHRSGKALGAHRWLASLQRQRE 445 **********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-17 | 34 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-15 | 39 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.653 | 45 | 105 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-14 | 48 | 109 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-14 | 49 | 102 | No hit | No description |
Pfam | PF00046 | 8.0E-16 | 52 | 102 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 26.833 | 201 | 449 | IPR002913 | START domain |
CDD | cd08875 | 4.60E-75 | 205 | 445 | No hit | No description |
SuperFamily | SSF55961 | 8.06E-19 | 206 | 443 | No hit | No description |
SMART | SM00234 | 1.1E-10 | 210 | 446 | IPR002913 | START domain |
Pfam | PF01852 | 9.1E-26 | 212 | 445 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.7E-10 | 472 | 691 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MDNEGHQQRN NNEDELHGLL VPEDQVDTES TGKDDNDEDY VPKPEMPSKR LKRHTPEQIQ 60 ELKAAYEQCH HPDDKTRRAL GAKIGLEARQ VQYWFQNQRT QMQAKALVQD SKTAQQENAA 120 LMAENVALRH AMLAKCCVTC GGETVPADLS LEKRRLLAEN ARLKHEYMRA TAFLGKIILE 180 ARPTEPPVSS SIHPVLSIVD GRAGRATLLR HAEASMEQFL MLATQGEPLW VPTPDGEVLS 240 YQVYQKKMFP VEHAVCPQGF VREATREAGM VRGTAADLVG ILTNANRWSE MFPGVVAGVT 300 AGDIVSGGIF TSRDRLIQLM NAELWVQSPR LRNRSMNFLR YSKLTADRRW AVMDVSVDGI 360 LEPEGSHKID LNVDNAVVPA FHKGCRLLPS GCLVEDMGNG YCKVTWVVHA EYDETTVPTI 420 FRPLHRSGKA LGAHRWLASL QRQREFLAVL HSSHVPSSDN TAAATAISSV GRRGILELAQ 480 RMMSSFYSAV SGPVTQPSSS IDEWHGSTGS GDKRIDAAVR MVTWRKSGSM LVLSASTTVW 540 LPNTPPRLVF EYLCNDQRRG EWDTLANGAA VKELGSIATG HLAGNAISVL CPNVTDGIRC 600 KMLILQETCT DASCSMVVYA PVEEKSMLAV MNGGEHASVF LLPSGFAILP DGHGKARHAA 660 CTSSAPGGHG NTAGSLLTVA CQALLLGSAP GNHAAGAFDD VGKLLRRAIK KIKVAVKAKI 720 VVPSLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028825.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349156.1 | 0.0 | uncharacterized protein LOC100383907 | ||||
Refseq | XP_023156325.1 | 0.0 | uncharacterized protein LOC100383907 isoform X1 | ||||
TrEMBL | A0A1E5WKZ3 | 0.0 | A0A1E5WKZ3_9POAL; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
STRING | Si033066m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8324 | 17 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-151 | HD-ZIP family protein |