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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do028609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 108aa MW: 11883.6 Da PI: 11.4054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.1 | 6.6e-11 | 39 | 82 | 3 | 50 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 y+GVr ++ +W+AeI p++ r+ +lg+f+taeeAa a+ ar Do028609.1 39 YRGVRERH-CVKWEAEIELPCN---RTPLWLGSFDTAEEAALAYTTAR 82 9***9555.899*******965...4*****************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-12 | 38 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-17 | 38 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-10 | 38 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.525 | 38 | 81 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-16 | 39 | 81 | No hit | No description |
Pfam | PF00847 | 2.5E-5 | 39 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-7 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MQFIQAQLHL QRNAGLGPRA TPMKSAGPVP PAVAPQQLYR GVRERHCVKW EAEIELPCNR 60 TPLWLGSFDT AEEAALAYTT ARPTASAGRK RASTSPKMRR PGHRSTPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do028609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820073.1 | 1e-35 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | O65665 | 1e-19 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | A0A1E5UU85 | 5e-73 | A0A1E5UU85_9POAL; Uncharacterized protein | ||||
STRING | Sb07g020090.1 | 4e-32 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 5e-14 | ERF family protein |