PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do028322.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 540aa    MW: 58670.7 Da    PI: 7.5221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do028322.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-11106131126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C++++++GtC++G +CkF+H+
  Do028322.1 106 PGEPDCNYYLKFGTCRFGIKCKFNHP 131
                 5789*********************8 PP
2zf-CCCH20.86.6e-07250272325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 +e+C++++  G Ck+G +Ck+ H
  Do028322.1 250 QEECKYYSTPGGCKFGKSCKYFH 272
                 699*****************988 PP
3zf-CCCH33.28.5e-11297321226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+f++rtG Ck+  +CkF+H+
  Do028322.1 297 GEKECPFYMRTGSCKFATNCKFHHP 321
                 7899********************9 PP
4zf-CCCH22.61.9e-07443469127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f ++G+Cky  +C+F+H++
  Do028322.1 443 PGQPECQHFVKSGFCKYRMKCRFHHPR 469
                 5789*********************96 PP
5zf-CCCH25.42.4e-08489514227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C ++ r+G CkyG+ C F+H++
  Do028322.1 489 DQPICTYYGRFGVCKYGPACMFNHPF 514
                 689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-5105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953105133IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5110133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.305247275IPR000571Zinc finger, CCCH-type
SMARTSM003560.067247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5251275IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4251272IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896295323IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7297321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4301320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826442470IPR000571Zinc finger, CCCH-type
SMARTSM003560.012442469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5446470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155487515IPR000571Zinc finger, CCCH-type
SMARTSM003560.0055487514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5488515IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5489514IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MADADANPPP PDAAASPIAS ISPSSVGAGD AVDADPDAIE KQLAGLGIAA AGGGGFPEPS  60
GWDDVPVPVP VDVVGGEEVA GEKVRGRPAP AGAGAADAKV RFPRRPGEPD CNYYLKFGTC  120
RFGIKCKFNH PSRKKKSNRV RGSGSSGSNS SSNKASSPDD DQAPREEYEG LVPDISDSVS  180
FDDKGSSSNL ENHRKTSYEV IDMKKGKIEP KISEEPGKGI YFKKLDETNI TNQKGAKDKR  240
KETFSEGSAQ EECKYYSTPG GCKFGKSCKY FHREGKEGKP EVERVELNFL GLPLRPGEKE  300
CPFYMRTGSC KFATNCKFHH PDPTNAPSKE PVLEHENGDT PQQNVQGPSQ PSVPIWPEQR  360
ALNEQHVPFL APAPSYSAGM IPPQGMYPSP DWSGYHQVPV NPYYPPGVPF PHFPAPHMNH  420
PMYKAADIPG HQQLSSDEYP ERPGQPECQH FVKSGFCKYR MKCRFHHPRS RQLAPLTGLS  480
PIGLPIKPDQ PICTYYGRFG VCKYGPACMF NHPFNFGPPV PAAGPPLHGQ YHPTSGNFTV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo028322.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807656.10.0zinc finger CCCH domain-containing protein 65-like isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A1E5WMZ30.0A0A1E5WMZ3_9POAL; Zinc finger CCCH domain-containing protein 65
STRINGGRMZM2G006493_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.16e-56C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]