 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do028037.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
G2-like |
| Protein Properties |
Length: 352aa MW: 38783.4 Da PI: 8.5724 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do028037.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 106.9 | 1.1e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
Do028037.1 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89
79****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MFPSKKATSA AAVSSNDRQM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK 60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKEFNDH SVKDAAAMEM QRNVASSSGI 120
MGRSMNDRSV HVNEAIRMQM EVQRRLHEQL EVQKHLQMRI EAQGKYMQSI LEKAYQTLAS 180
GDVAACPAGY KSLGNQAILD VCSLKDIGPS MGFASLQDLH MYGGGHLDLQ QQMERPMEAF 240
FANCDIGSLG KKRTNPYAAG KSPMMWGDDE QGKCVDHLQM APPMMDAGID VMDSMTDVYG 300
DVKPMMSGDS TGSKGCFDGK LERPSPRRPH MGNERMGSPS VIGGQTRNLS YG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 5e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 5e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 5e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 5e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU961613 | 0.0 | EU961613.1 Zea mays clone 237034 mRNA sequence. |
| GenBank | KJ728052 | 0.0 | KJ728052.1 Zea mays clone pUT6198 G2-like transcription factor (GLK53) mRNA, partial cds. |
| Publications
? help Back to Top |
- Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
Vascular gene expression: a hypothesis.
Front Plant Sci, 2013. 4: p. 261
[PMID:23882276] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kondo Y, et al.
Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
Plant Cell, 2016. 28(6): p. 1250-62
[PMID:27194709] - Shibuta M,Abe M
FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
Plant Cell Physiol., 2017. 58(11): p. 2017-2025
[PMID:29036620]
|
