PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

ERF

Protein Properties

Length: 129aa MW: 14000.3 Da PI: 8.8812

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do028020.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.7	9e-21	17	69	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd ++ r++lg+f+taeeAa+a+++a+ +++g+ Do028020.1 17 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRAAYAMRGH 69 69******.7*****3...2236************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.1E-16	17	69	IPR001471	AP2/ERF domain
CDD	cd00018	4.97E-18	17	77	No hit	No description
SuperFamily	SSF54171	5.95E-23	18	77	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.5E-30	18	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.972	18	76	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-33	18	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-10	19	30	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-10	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEGGGWDDQG KDGGEATKYR GVRRRPSGKF AAEIRDSSRQ SVRVWLGTFD TAEEAARAYD 60 RAAYAMRGHL AVLNFPAEAR NYVRGGSSSS RQQQQGGGAG GSGRQVIELE YLDDQVLQEM 120 LKGGDGKNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-32	13	116	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do028020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004587	3e-72	AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBank	AP004623	3e-72	AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBank	AP014964	3e-72	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	3e-72	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822510.1	1e-60	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	6e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1E5UIK3	3e-87	A0A1E5UIK3_9POAL; Uncharacterized protein
STRING	Pavir.Fb02184.1.p	5e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	6e-24	Ethylene-responsive element binding factor 14

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]