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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do027961.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
C2H2 |
Protein Properties |
Length: 145aa MW: 15857.8 Da PI: 5.6437 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do027961.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+ F ++ L H++ H
Do027961.1 30 FPCTYCDHKFYTSQALGGHQNAH 52
89******************988 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 145 aa
Download sequence Send
to blast |
MKMPEQELDL ELSLLHRFPS PEPEEPVGFF PCTYCDHKFY TSQALGGHQN AHKYERTLAK 60 RRREIAAAMR ANQATVKGAG GQVDADSRPT GCAGVASVAG AEPEAAERAR PLVAQQAVPV 120 PWQSSGDLQM SNIERADELD LTLRL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005686 | 2e-39 | AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03. |
GenBank | AP005747 | 2e-39 | AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17. |
GenBank | AP014965 | 2e-39 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
GenBank | CP012617 | 2e-39 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |