PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027942.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 398aa    MW: 42397.2 Da    PI: 7.2137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027942.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-05227248122
                 EEETTTTEEESSHHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                 y+C+ CgksF+++  L  H   
  Do027942.1 227 YTCKECGKSFPTNQALGGHVAG 248
                 9************999888765 PP
2zf-C2H214.69.9e-05285307123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +C+k+F++  +L  H+r+H
  Do027942.1 285 HECRKCHKVFNTGVQLGGHMRVH 307
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-9225249No hitNo description
Gene3DG3DSA:3.30.160.602.3E-4226245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-7227250IPR007087Zinc finger, C2H2
SMARTSM003550.025227249IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907227254IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-9280307No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4283307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-7285308IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053285312IPR007087Zinc finger, C2H2
SMARTSM003550.032285307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MASSSSPPPR RLPDDDDLEE GQFVPSVYYE SSDTDNDDGC YMLYRSPSRR EDEARAPPQH  60
GRRSLIRPED VLALGRGDAL PSPTPSSDGT ISDDDANLRP ASVFRTTDEP KRGVELHGGG  120
WAATGRRGWA GGRPAAARAP LNNSQSSHSN SNLSGDSSSA QAGVVHQPSA DQPQLLHHQP  180
PAAPPPPPAL LHLAQVAQHP TAPPPAAQPQ LPQLVPQRAA DRPRREYTCK ECGKSFPTNQ  240
ALGGHVAGHR TRQREAEATA AVAWMMPLPD AGAALGRGRR AEAPHECRKC HKVFNTGVQL  300
GGHMRVHYTG PPIVPVRKNR KRGLALPVED EDIAAPPPPG LSLALSIKME EVPPSPAPAG  360
AGRVVRLFGI DINPQVQAPS EQQSSGMMED FLSAGGQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027942.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.11e-106zinc finger protein GLI4-like
TrEMBLA0A1E5UKX20.0A0A1E5UKX2_9POAL; Uncharacterized protein
STRINGPavir.Cb02113.1.p5e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-10zinc-finger protein 2