PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do027676.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 378aa MW: 41193.1 Da PI: 6.6902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027676.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	287	309	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F k + ++H +++ Do027676.1 287 FGCRRCGKPFAVKGDWRTHEKNC 309 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.22E-5	271	307	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEGAAAGSSF SVTYYEWLKP RSSSPSPPPS PSSSSSTSST TLSTPSVDRS AADDGGHGRD 60 AMTCLPLLGR LEGRATTPDD RGQNPVKEEL MMSNNITTIV TPGEAATGVD LNIGLPASGG 120 YSSEEAPVDE DLDDDEEDFE EEEEDKPREH EKCKEEEAGE QAMNSEMVES VVEGSGPDYL 180 RVGGEEGIKG FIGSRGRRFW IPTPAQILVG PVQFICQMHM WGHGREYRKG PESLKGTQAA 240 TLALLKLPCY CCAPGCRNNV AHPRARPLKD FRTLQTHYKR KHGDKHFGCR RCGKPFAVKG 300 DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHCP VAPDQAAAAA APLLKPKERI 360 IRFDQAVVAP WNGARAHA

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEGAAAGSSF SVTYYEWLKP RSSSPSPPPS PSSSSSTSST TLSTPSVDRS AADDGGHGRD  60
AMTCLPLLGR LEGRATTPDD RGQNPVKEEL MMSNNITTIV TPGEAATGVD LNIGLPASGG  120
YSSEEAPVDE DLDDDEEDFE EEEEDKPREH EKCKEEEAGE QAMNSEMVES VVEGSGPDYL  180
RVGGEEGIKG FIGSRGRRFW IPTPAQILVG PVQFICQMHM WGHGREYRKG PESLKGTQAA  240
TLALLKLPCY CCAPGCRNNV AHPRARPLKD FRTLQTHYKR KHGDKHFGCR RCGKPFAVKG  300
DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHCP VAPDQAAAAA APLLKPKERI  360
IRFDQAVVAP WNGARAHA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027676.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-146	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961925.1	0.0	protein TRANSPARENT TESTA 1
TrEMBL	A0A1E5UZM3	0.0	A0A1E5UZM3_9POAL; Zinc finger protein WIP5
STRING	Si022296m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	3e-82	WIP domain protein 5