PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do027547.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 407aa    MW: 43188.8 Da    PI: 7.0558
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do027547.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05239260122
                 EEETTTTEEESSHHHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                 y+C+ CgksF+++  L  H   
  Do027547.1 239 YTCKECGKSFPTNQALGGHVAG 260
                 9************999888765 PP
2zf-C2H214.50.0001297319123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C +C+k+F++  +L  H+r+H
  Do027547.1 297 HECRKCHKVFNTGVQLGGHMRVH 319
                 78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.5E-10237261No hitNo description
Gene3DG3DSA:3.30.160.602.4E-4238257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.025239261IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907239266IPR007087Zinc finger, C2H2
PfamPF139121.2E-7239262IPR007087Zinc finger, C2H2
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
SuperFamilySSF576679.5E-10292319No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4295319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.032297319IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-7297320IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053297324IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASSSSPPPR RLRHVPDVDD LELEEGQFVP ASEESSPDTD DGDGRYLLYR YPSRREDEAR  60
GHPQHGHRSL IRPEYVLALG RGDALPSPTP SSDGTISDED ANLSPASVFS TTTDEPKRGV  120
ALHGGWAATG RRGWTGSKPA AARAPLNNAQ SSHSNSNLSG DSSSAQAVVV HQPPAPPPMH  180
FAEQAQLLHQ PASPPPPSPA LLHLAQVAQH PAAPPPPAQP QLPQLVLHQH AADRPRREYT  240
CKECGKSFPT NQALGGHVAG HRTRQREAEA AAAAAGTTPL QDGDAALRRG SRAEAPHECR  300
KCHKVFNTGV QLGGHMRVHY TGPPIVPFRK NRKRGLAPPV EDDTAAPPGL SLALSIKTEE  360
APPSPAPAGA GRVVRLFGVD ISPQVQAPSE QQPFDTTEDF SSAGGQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo027547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.11e-96zinc finger protein GLI4-like
TrEMBLA0A1E5V5J20.0A0A1E5V5J2_9POAL; Uncharacterized protein
STRINGPavir.Cb02113.1.p5e-77(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.29e-14zinc-finger protein 2