PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

ERF

Protein Properties

Length: 127aa MW: 13968.5 Da PI: 8.6908

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do027233.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.4e-18	16	68	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd +++r++lg+f+ta eAa+a+++a+ ++g+ Do027233.1 16 TKYRGVRRRP-SGKFAAEIRDS---RrQSARIWLGTFDTAGEAARAYDRAAYLMRGH 68 69******.7*****3...2345**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.94E-18	16	75	No hit	No description
Pfam	PF00847	1.8E-14	16	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	17	76	IPR016177	DNA-binding domain
SMART	SM00380	1.4E-30	17	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-29	17	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.918	17	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.1E-9	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MEGCGCVDDG SDGSETKYRG VRRRPSGKFA AEIRDSRRQS ARIWLGTFDT AGEAARAYDR 60 AAYLMRGHLA VLNFPGETHK YVRGSSSSQQ PQHGGGGSGQ QVMELEYLDD KVLQDLLIKD 120 GKEKKNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-30	17	112	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do027233.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683705.1	2e-69	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	3e-36	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1E5UKV4	1e-88	A0A1E5UKV4_9POAL; Uncharacterized protein
STRING	Si011941m	5e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	2e-25	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]