PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026796.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 185aa    MW: 19433.6 Da    PI: 8.1182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026796.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000155476123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+++F ++  L  H++ H
  Do026796.1 54 FACNYCHRRFYSSQALGGHQNAH 76
                78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.13E-65281No hitNo description
PROSITE profilePS5015711.0535481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MANEPAASRA NGVSLDLRLD DLSPRRRRSS AAVAAATAPG PAVVDDRRPP GEAFACNYCH  60
RRFYSSQALG GHQNAHKLER TLAKRSRDIL PAPPSPPSPA SVVFNAAPEG NNRDVDFLLP  120
TTYGAARALA AEDDATAPPR VAMDMARWGA DTATADAGCG RLGLGHGHGH GHGRNGEEID  180
LSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0868807e-52BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds.
GenBankBT0869177e-52BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds.
GenBankBT0871607e-52BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds.
GenBankEU9605227e-52EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804127.11e-65zinc finger protein 10-like
TrEMBLA0A1E5VPT71e-129A0A1E5VPT7_9POAL; Uncharacterized protein
STRINGPavir.Ba01492.1.p1e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-17zinc finger protein 2