PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026557.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 443aa    MW: 45775.1 Da    PI: 9.0258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026557.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.3e-06177199223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  Cp Cg++F+  ++L++H+   H
  Do026557.1 177 ACPQCGEVFTKADSLEHHQAIrH 199
                 6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.494176204IPR007087Zinc finger, C2H2
PROSITE patternPS000280176199IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-16201283No hitNo description
Gene3DG3DSA:3.90.228.101.3E-8203329IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563999.59E-16326439No hitNo description
Gene3DG3DSA:3.90.228.101.3E-8364439IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAVAASSKKS PKVATAAAAA AAKNHPQYQQ HRVQQSTKKK ASAAAASSSS WEQVKSLLSC  60
RSATAAARVH DPAAPSALAR LRGSGAGACG ASLCAMRDVV DAASSAASSA AASATADRDT  120
APLNRRRAHR AGSSSSAAGA GGSHHSSLRG LSGCYECRAI NVEPMSRRYP RPRELCACPQ  180
CGEVFTKADS LEHHQAIRHA VSELGPEDSG RNIVEIIFKS SWQKRDRPIC HIDRILKVHN  240
APRTVARFEA YRDAVRSRCR ATVARAAADG NELLRFHSAP LACALGLSGA TSLCAADSSS  300
SRSNATADTA SSSSSSSAAA DTCCGVCTAI RHGFAPWVGA HPLGVRTTAS SGRAHDCGSA  360
SSAQAANANG GCRAMLVCRV IAGRVRRDGD ATSSETGEEG PFDSVAGEDA ASSSVYGNLE  420
ELFVANPRAI LPCFVVIYRV LES
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822927.10.0uncharacterized protein LOC112898841
TrEMBLA0A1E5V1Z40.0A0A1E5V1Z4_9POAL; Uncharacterized protein
STRINGSi009863m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.17e-79C2H2-like zinc finger protein