PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026536.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 889aa    MW: 98665.1 Da    PI: 6.7234
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026536.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1156.84.5e-49110018117
        CG-1  18 LenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116
                 L+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np+fqrrc+w+Le ++e+ivlv+y+e
  Do026536.1   1 LQNHERFPITHEAPKKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPSFQRRCFWMLEPAYEHIVLVQYRE 99 
                 79************************************************************************************************9 PP

        CG-1 117 v 117
                 v
  Do026536.1 100 V 100
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038593.7E-40199IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143769.3281106IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-551101IPR005559CG-1 DNA-binding domain
PfamPF018338.8E-7407478IPR002909IPT domain
Gene3DG3DSA:2.60.40.108.4E-7408499IPR013783Immunoglobulin-like fold
SuperFamilySSF484039.11E-16435483IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.11E-16602699IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-16602697IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.175604696IPR020683Ankyrin repeat-containing domain
CDDcd002041.03E-9609696No hitNo description
PfamPF127961.1E-6618697IPR020683Ankyrin repeat-containing domain
SMARTSM002489.7E-5637666IPR002110Ankyrin repeat
PROSITE profilePS5008811.301637669IPR002110Ankyrin repeat
SMARTSM002484600676705IPR002110Ankyrin repeat
SMARTSM0001527757779IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.602758787IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.46E-5816862IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.712816845IPR000048IQ motif, EF-hand binding site
SMARTSM0001519817837IPR000048IQ motif, EF-hand binding site
PfamPF006120.016818836IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6838860IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.621839868IPR000048IQ motif, EF-hand binding site
PfamPF006122.2E-5840860IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
LQNHERFPIT HEAPKKPPSG SLFLYNRRVN RYFRRDGHTW RRKKDGRTVG EAHERLKVGN  60
VDALSCYYAH GEQNPSFQRR CFWMLEPAYE HIVLVQYREV AEGRYYSSQL SNGPPESLSS  120
LGYPNAIYGN QYLSSISGTS EGSESHQSYS NLSSVTEVSS YSGNKEYNKD GSSLLSIPEL  180
GQTRLEQTTE VSQADNGNSK NKSGLNVALK KIAEQLSLGD DDDDGYIYSN KAQPLGFATN  240
IEAAGDNQVK QIQPEGTQKG LCRNIAPSWE DVLHSSSGLP TPSIYQSDVQ YQQNSEYHPP  300
GRIDSSDLRI QLSAAKRFLL GPDASIDSPS SNFMLRNKGN SPTDTLSAHD SRLESSLNPD  360
WETKAPLAFQ SNSQGSEITD LLFDHGQFEP YSRADTRLTL GQMKQFSIRE ISPEWAFSYE  420
ITKVIITGDF LCDPSNLCWA VLFGDSEVPV EIVQPGVLRC HTPLHSSGKL RLCITSGNRE  480
VCSEFKEFEF RSKPTSSSFS DIAPSSRPLK SSEELVFLAK FARMLLFENG SSEVPDGDPQ  540
SGQCPKLRMK EELWDRLIDE LKLGCANPLS TVDQIMEELL KSRLQQWLTV KLKGFNGTTS  600
LSKHDQGIIH LISALGYEWA LSSILSSGVG LNFRDSNGWT ALHWAAYFGR EKMVAALLAA  660
GASATAVTDP TAQDPVGKTA AFLASERGHT GLAGYLSEVS LTSYLASLTI EESDVSKGSA  720
EVEAERAVES ISQRSAQLHG GTEDELSMKD SLAAVRNAAQ AAARIQNAFR AFSFRKRQQK  780
TARLRDEYGM TQEDIDELAA ASRLYHQAHA SSGQFYDKAA VSIQKKYKGW KGRRHFLNMR  840
RNAVKIQAHV RGHQVRKKYR TIAELGGSHE VTSIFDSDLE LLGINNFML
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026536.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975407.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A1E5UMC80.0A0A1E5UMC8_9POAL; Calmodulin-binding transcription activator 4 (Fragment)
STRINGSi009249m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-117Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains