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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026485.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 256aa MW: 28651.8 Da PI: 10.0736 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.7 | 6.4e-11 | 19 | 108 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 kvl+ps+++++ l +p kf++++ +++ +s +l ++ + ++ + + + g +++++GW++F ++g+ e D+++++++g++ f+++v Do026485.1 19 KVLLPSSTSRK--LGIPPKFVQKNiAESEMKSSVAVLLSPLYNFCRIVVEKDES-GNMFFSGGWSQFLVSHGITEFDVLLLRYEGNMVFTMKV 108 77766666554..9**********966667788999999999999999943433.3478999*************************995554 PP | |||||||
2 | B3 | 52.1 | 1.2e-16 | 172 | 255 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS...-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesg...rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +f++++g++k+ s ++tl+++s r+W+v++ + + +s++ lt+GW++F+ +n +kegD+++F ++ ++ +v + r+ Do026485.1 172 TVAGTFCKAIGLQKRAS-EITLRTTSAhgtRTWQVRFLVyKYRSRTGQLTRGWRGFCVDNAIKEGDVCTFNIVE--TTLWHVEIMRR 255 67789*****9998765.888887666669*******66355555588***********************655..33356776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.515 | 15 | 112 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.7E-7 | 17 | 112 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.08E-15 | 17 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-15 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-9 | 19 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.33E-11 | 19 | 109 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-16 | 150 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.9E-7 | 168 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-13 | 173 | 254 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.45E-13 | 173 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.05E-12 | 177 | 240 | No hit | No description |
PROSITE profile | PS50863 | 11.589 | 189 | 256 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGSSSGNHGA RASIARHLKV LLPSSTSRKL GIPPKFVQKN IAESEMKSSV AVLLSPLYNF 60 CRIVVEKDES GNMFFSGGWS QFLVSHGITE FDVLLLRYEG NMVFTMKVFG PDGCQKGFKD 120 QDTSSKELDR TSFGDIKTLE DEEDPASSSS KRKSMAKKPD VSAHVHHFLL KTVAGTFCKA 180 IGLQKRASEI TLRTTSAHGT RTWQVRFLVY KYRSRTGQLT RGWRGFCVDN AIKEGDVCTF 240 NIVETTLWHV EIMRRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026485.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825226.1 | 2e-87 | putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A1E5V9D7 | 0.0 | A0A1E5V9D7_9POAL; Putative B3 domain-containing protein | ||||
STRING | Pavir.Ga02236.1.p | 2e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31630.1 | 2e-13 | B3 family protein |