 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Do026445.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
Family |
NAC |
Protein Properties |
Length: 296aa MW: 32681.2 Da PI: 7.6393 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do026445.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169 | 1.5e-52 | 11 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97
+ppGfrFhP+d+elv +yL ++++g+ + +i +vd++k+ePwdLp+++ + kewyfF +rd+kyatg+r+nrat sgyWkatgkd++v++ +
Do026445.1 11 MPPGFRFHPRDDELVLDYLLHRLSGRAHAG-AAIVDVDLNKCEPWDLPEAAGVGGKEWYFFNQRDRKYATGHRTNRATVSGYWKATGKDRAVVAGgdDA 108
79*************************887.78***************8888899**************************************986666 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129
++vg++ktLvfy+grapkg+kt+Wvmhe+rle
Do026445.1 109 AVVGMRKTLVFYRGRAPKGRKTEWVMHEFRLE 140
77***************************985 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MSSISMVEAR MPPGFRFHPR DDELVLDYLL HRLSGRAHAG AAIVDVDLNK CEPWDLPEAA 60 GVGGKEWYFF NQRDRKYATG HRTNRATVSG YWKATGKDRA VVAGGDDAAV VGMRKTLVFY 120 RGRAPKGRKT EWVMHEFRLE PPAPPPPPQH HLPAPATARH QRLKEDWVLC RVFYKSRTTT 180 PKLPSEDAHD GTPSTELDLP AALPLAPLVD TYTAFGAAPT VTEQVSCFSG LPALPFKRPV 240 SFGDLLAFDT SEKVSIGTVM LSSMSSNSSS SVLELPPNCN WNQENVLSQM WDPLGI
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-46 | 6 | 182 | 15 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by auxin. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU958128 | 1e-127 | EU958128.1 Zea mays clone 1674566 NAC domain-containing protein 21/22 mRNA, complete cds. |
Publications
? help Back to Top |
- Le Hénanff G, et al.
Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Xiao D, et al.
SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] - Huo X,Wang C,Teng Y,Liu X
Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] - Chen X, et al.
Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] - Liu C,Wang B,Li Z,Peng Z,Zhang J
TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]
|