PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do026439.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 347aa    MW: 37719.9 Da    PI: 7.0477
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do026439.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05164183120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++C  C+k+F+r  n++ H+
  Do026439.1 164 FSCAVCNKTFNRFNNMQMHM 183
                 89*****************9 PP
2zf-C2H213.70.00018254276123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C  Cgk+F  + + ++H +++
  Do026439.1 254 YACRRCGKRFAVRGDWRTHEKNC 276
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-5159185No hitNo description
PROSITE profilePS5015710.055164191IPR007087Zinc finger, C2H2
SMARTSM003550.64164186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-5164183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SMARTSM00355230217249IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.9E-6240274No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6240274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558254274IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704254274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MHPYTHPYQH HAAAVPPSKQ HGGHGEEEDD QSMLLLSLWP PGHHHGGIAA SSACSSSPSI  60
ISTTTSMAAA TAASYPWLSH HQSHYNGGCG GGSSSSHSSF LFHEQAEPDV SISLSIAPPC  120
SNAGFAAPAV QSTVTTVTPG GSLQVPSQYW IPSAAEILVG STQFSCAVCN KTFNRFNNMQ  180
MHMWGHGSQY RKGSESLRGA ITVGTAPPAS LMRLPCYCCA EGCRNNIEHP RARPLKDFRT  240
LQTHYRRKHG ARPYACRRCG KRFAVRGDWR THEKNCGKLW FCVCGSDFKH KRSLKDHVRS  300
FGGGHAPHIV ESVTVEDDEE DDDDHDDADQ MDDNCNGAAD PTDMLVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo026439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460014.11e-180zinc finger protein WIP6
SwissprotQ9FX681e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1E5VYM10.0A0A1E5VYM1_9POAL; Zinc finger protein WIP6
STRINGSb02g020840.11e-179(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-100C2H2-like zinc finger protein