PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do026330.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 612aa MW: 69117 Da PI: 5.3165

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do026330.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	309.6	7.4e-95	232	605	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+ lL++cA+av++gd a++lL ++++++sp+gd++qRla++f t+ +e +a++l+ v+ + ++ N Do026330.1 232 LRALLIHCAQAVATGDRLIATELLRKIKQRSSPRGDATQRLAHCFXXXXXXXXXXXXXXXXXXXXXXXTP---AVELHKAYQLYLTVCCFQMAAFKFSN 327 5789*****************************************99999998555555555555555...89999***************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++Il+a++g ++vHi+D++ +G+QWp Ll La+ +gpp+++iT+++ p++g ++e+tg+rL++fA+++gvpf+f+ ++ ++e++ +++L+ Do026330.1 328 RTILKATAGRKKVHIVDYSDHYGFQWPILLGCLATNCeGGPPEVKITVISLPQPGfrPGARIEQTGRRLSNFARRCGVPFKFHS-IVAKWETVCVDDLD 425 ******************************877699**********9999**********************.6999****** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++pgE l+Vn+ ++ ++l+de +++s +rd vL+ +++++P++++++ +++++n + F++rf eal yysa+fd+++++++r+s+eri vEr llgr Do026330.1 426 TEPGELLIVNSLFHFEKLMDEGDDIDSpcPRDMVLNNIQKMRPDLFILCTENSSYNVPFFVTRFREALFYYSAMFDMMDTTASRDSDERILVERDLLGR 524 ******************99999999***************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + nv+aceg +r++r et+++W +r+ +aG++++pl+ ++ + ++ l+ + + + ++ ++++l++gWk+r L+++S W Do026330.1 525 CALNVIACEGPDRVKRPETYKQWTARIARAGLRQLPLDPEVLTVVRKNLKDGYHRDFVIDVDQQWLLQGWKGRILYAMSTW 605 **********************************************999899*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.812	206	586	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-92	232	605	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MQDDALLLPF ITRVLMEEED IDDNPDHPAL LEAQQPFADI LSDAAASSTN KSSAFDSPAF 60 AANATWPYDP VELSHQLLTH PDMGVIGLHG GTEDDSLAST LFGGCNRVTM DMLNQAFLKG 120 MEEANKFLPT TTTNSLSDLE DSSVDHLRRD NNGRGRKNRH NNDWDSLEAE IGRSCKLMLP 180 EAEEANETVD KCILNVYQSL FERMMNLSIS VDIEAEKKIK KEKGSTNEAV DLRALLIHCA 240 QAVATGDRLI ATELLRKIKQ RSSPRGDATQ RLAHCFXXXX XXXXXXXXXX XXXXXXXXXT 300 PAVELHKAYQ LYLTVCCFQM AAFKFSNRTI LKATAGRKKV HIVDYSDHYG FQWPILLGCL 360 ATNCEGGPPE VKITVISLPQ PGFRPGARIE QTGRRLSNFA RRCGVPFKFH SIVAKWETVC 420 VDDLDTEPGE LLIVNSLFHF EKLMDEGDDI DSPCPRDMVL NNIQKMRPDL FILCTENSSY 480 NVPFFVTRFR EALFYYSAMF DMMDTTASRD SDERILVERD LLGRCALNVI ACEGPDRVKR 540 PETYKQWTAR IARAGLRQLP LDPEVLTVVR KNLKDGYHRD FVIDVDQQWL LQGWKGRILY 600 AMSTWVVNGA TT

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MQDDALLLPF ITRVLMEEED IDDNPDHPAL LEAQQPFADI LSDAAASSTN KSSAFDSPAF  60
AANATWPYDP VELSHQLLTH PDMGVIGLHG GTEDDSLAST LFGGCNRVTM DMLNQAFLKG  120
MEEANKFLPT TTTNSLSDLE DSSVDHLRRD NNGRGRKNRH NNDWDSLEAE IGRSCKLMLP  180
EAEEANETVD KCILNVYQSL FERMMNLSIS VDIEAEKKIK KEKGSTNEAV DLRALLIHCA  240
QAVATGDRLI ATELLRKIKQ RSSPRGDATQ RLAHCFXXXX XXXXXXXXXX XXXXXXXXXT  300
PAVELHKAYQ LYLTVCCFQM AAFKFSNRTI LKATAGRKKV HIVDYSDHYG FQWPILLGCL  360
ATNCEGGPPE VKITVISLPQ PGFRPGARIE QTGRRLSNFA RRCGVPFKFH SIVAKWETVC  420
VDDLDTEPGE LLIVNSLFHF EKLMDEGDDI DSPCPRDMVL NNIQKMRPDL FILCTENSSY  480
NVPFFVTRFR EALFYYSAMF DMMDTTASRD SDERILVERD LLGRCALNVI ACEGPDRVKR  540
PETYKQWTAR IARAGLRQLP LDPEVLTVVR KNLKDGYHRD FVIDVDQQWL LQGWKGRILY  600
AMSTWVVNGA TT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-39	236	605	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do026330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450068.2	0.0	scarecrow-like protein 14
TrEMBL	A0A1E5WF13	0.0	A0A1E5WF13_9POAL; Scarecrow-like protein 9
STRING	Sb05g027783.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-127	SCARECROW-like 14