PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do026119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18613.7 Da PI: 5.9263 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.5 | 7.5e-32 | 1 | 94 | 8 | 101 |
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lrr+Ca+dCvlapyfp +qp+++a vh +FG++nv+++l++lp +er +a++++ eA++r++dPvyG++gvi +lqq+++ +++ela+++++l Do026119.1 1 LRRRCAPDCVLAPYFPXSQPRRYADVHAVFGTNNVTRVLQSLPVQERGRAADTMGTEARWRMQDPVYGCTGVIDRLQQEIRAVQHELARTRAQL 94 69***************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 4.9E-31 | 1 | 91 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 20.373 | 1 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
LRRRCAPDCV LAPYFPXSQP RRYADVHAVF GTNNVTRVLQ SLPVQERGRA ADTMGTEARW 60 RMQDPVYGCT GVIDRLQQEI RAVQHELART RAQLAVHVQG TALLQRTQQP TPLLPPPQPL 120 APAPTVAVHA GAHGVTVHEE EDEEAPLMDP DEFLDLPDNG RTENRNE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-27 | 1 | 100 | 18 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-27 | 1 | 100 | 18 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do026119.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444738.2 | 2e-62 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A1E5UP23 | 1e-117 | A0A1E5UP23_9POAL; LOB domain-containing protein 23 (Fragment) | ||||
STRING | Pavir.Cb01140.1.p | 3e-65 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-33 | LOB domain-containing protein 24 |