PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do026013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 177aa MW: 18877.4 Da PI: 10.5804 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 119 | 162 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 ++WT+ + lv+a k ++++ +W+++a+ ++ g+t qck + Do026013.1 119 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 162 58********************************.********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.938 | 1 | 41 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.1E-5 | 117 | 169 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.98E-9 | 119 | 172 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-7 | 120 | 162 | No hit | No description |
Pfam | PF00249 | 9.4E-7 | 120 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-5 | 120 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.179 | 121 | 162 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MLRKAIQKYP KGTSRRWEVV SEFIGTGRSV EEILKATKTV LLQKPDSTKA FDSFLEKRKP 60 AQSIASPLST RDETVSSSTD GAGTASSKAA AQPASSQTAN GKAAADPVPD SAPSATDPDA 120 WTEAQVLALV QALKAFPKDA SQRWERVAAA VPGKTVVQCK KKVAAMRENF RSKKSGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do026013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823394.1 | 1e-114 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A1E5VXU1 | 1e-122 | A0A1E5VXU1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb02409.1.p | 1e-113 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8119 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 8e-52 | DnaJ domain ;Myb-like DNA-binding domain |