PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025758.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 362aa MW: 38282 Da PI: 8.323 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.5 | 4.7e-31 | 239 | 294 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH++Fv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Do025758.1 239 KARRTWSPELHRQFVAALSQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 294 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.318 | 236 | 296 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.77E-16 | 237 | 297 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 237 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-25 | 239 | 294 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 241 | 292 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGLDVGEIGM GADLSLDLRY FAAKAVRQAR DAPASDVDAC IRRLEEERGK IEMFRRELPL 60 CARLLAEVID VMKGEAGKKT KSDRKVVAAA EEDGAAGDKS KWMSTAQLWT GDSGREDAES 120 EKQDKGRSSP EAMSRGGGGG GGFLPFKAVG SGAPAFAPLC LRVEDKAADA GMPDLSLLSP 180 PASKSAPAAA GAAEESRRQV VGFAQAAARA VAMTPSAPSL SLQSQSQQTA QQQQQQARKA 240 RRTWSPELHR QFVAALSQLG GAQVATPKQI RELMKVDGLT NDEVKSHLQK YRLHNRRAPG 300 SAAVSPPIVL VGGLWIPQEQ SSSQSGSPQG PLHFSTSGIA VSSAATVSCE EEDGRSESYG 360 WK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 239 | 292 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 239 | 292 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 239 | 292 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 239 | 292 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025758.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804519.1 | 0.0 | transcription factor NIGTH1-like | ||||
TrEMBL | A0A1E5UUC5 | 0.0 | A0A1E5UUC5_9POAL; Myb family transcription factor EFM | ||||
STRING | Pavir.Ba02240.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 9e-34 | G2-like family protein |