PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Nin-like

Protein Properties

Length: 883aa MW: 96854 Da PI: 5.2283

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do025682.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.3	1.2e-07	588	620	1	27
RWP-RK 1 aekeisledlskyFslpikdAAkeLg......v 27 aek+isle+l++yFs+++k+AAk+Lg v Do025682.1 588 AEKTISLEVLQQYFSGSLKNAAKSLGgplpipV 620 589**********************95555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54277	1.24E-20	779	874	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-24	789	870	No hit	No description
PROSITE profile	PS51745	20.317	789	871	IPR000270	PB1 domain
SMART	SM00666	1.4E-24	789	871	IPR000270	PB1 domain
Pfam	PF00564	5.1E-15	789	870	IPR000270	PB1 domain
CDD	cd06407	3.20E-32	790	870	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MDLDPPTSAS GDTCGVSSDA WPFDSLTTSL LFSSVSASPP LPPLPAYSSS WLTPPSPLWL 60 FEDRHLLPLD APQAPEAAVA AAVVEEVQRA RTGNSDTASK RVEQINHKWQ FHLSLDEDGT 120 DNSSLFKERL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY 180 RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSTEYPRLNH AISYNVHGTV 240 ALPVFDPSAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG 300 RQIALVEILE ILTVVCEEHK LPLAQTWFPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS 360 TSDVAFHVID AHMWGFRDAC VEHHLQKGQG VSGKAFITHK PCFSKDIRKF CKLKYPLVHY 420 ARMFGLAGCL AVCLQSSYTG HDDYILEFFL PPDCIDEDDQ NALLESIFTL MKQCLRSLKV 480 VGDRDSSGVS LQLSNMLKIE NEEFKTDVQF DNSDGSLNES PEGDTYGGAH KFDNGNMKVS 540 NMPEGHLLAD DYSQDNGASA GRPNGSGASD SSVLHKANKP PERRRGKAEK TISLEVLQQY 600 FSGSLKNAAK SLGGPLPIPV GPSSDSLNVE KVTQSKVAEP SNLAVDGDRD SSLQKSFEND 660 GHFGMLMAQQ GFIDNNNNDA QLEADKASHS RSSSGEGSIN SRTSEGSCQG SPANQTFVCK 720 PIASTFAEPQ LNPEEFHKEA FQEPQLPLSR MLIEDSGSSK DLKNLFTPAA DQPFLAPPSN 780 LVSMKHSGTV TIKASFKEDI VRFRFPCSGS VTVLKDEVAK RLRMDVGTFD IKYLDDDHEW 840 VKLACNADWE ECMEISRNSG SHVIRLLVSD ITAHLGSSCG SSG

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MDLDPPTSAS GDTCGVSSDA WPFDSLTTSL LFSSVSASPP LPPLPAYSSS WLTPPSPLWL  60
FEDRHLLPLD APQAPEAAVA AAVVEEVQRA RTGNSDTASK RVEQINHKWQ FHLSLDEDGT  120
DNSSLFKERL TQALRYFKES TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSIGLLQY  180
RAVSMMYMFS VDGENVGELG LPGRVYKQKV PEWTPNVQYY SSTEYPRLNH AISYNVHGTV  240
ALPVFDPSAQ SCIAVVELIM TSKKINYACE VDKVCKALEA VNLKSTEILD HPNVQICNEG  300
RQIALVEILE ILTVVCEEHK LPLAQTWFPC KYRSVLAHGG GLKKSCLSFD GSCMGEVCMS  360
TSDVAFHVID AHMWGFRDAC VEHHLQKGQG VSGKAFITHK PCFSKDIRKF CKLKYPLVHY  420
ARMFGLAGCL AVCLQSSYTG HDDYILEFFL PPDCIDEDDQ NALLESIFTL MKQCLRSLKV  480
VGDRDSSGVS LQLSNMLKIE NEEFKTDVQF DNSDGSLNES PEGDTYGGAH KFDNGNMKVS  540
NMPEGHLLAD DYSQDNGASA GRPNGSGASD SSVLHKANKP PERRRGKAEK TISLEVLQQY  600
FSGSLKNAAK SLGGPLPIPV GPSSDSLNVE KVTQSKVAEP SNLAVDGDRD SSLQKSFEND  660
GHFGMLMAQQ GFIDNNNNDA QLEADKASHS RSSSGEGSIN SRTSEGSCQG SPANQTFVCK  720
PIASTFAEPQ LNPEEFHKEA FQEPQLPLSR MLIEDSGSSK DLKNLFTPAA DQPFLAPPSN  780
LVSMKHSGTV TIKASFKEDI VRFRFPCSGS VTVLKDEVAK RLRMDVGTFD IKYLDDDHEW  840
VKLACNADWE ECMEISRNSG SHVIRLLVSD ITAHLGSSCG SSG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do025682.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085359	0.0	BT085359.2 Zea mays full-length cDNA clone ZM_BFc0002J20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814939.1	0.0	protein NLP3 isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2T7DTG5	0.0	A0A2T7DTG5_9POAL; Uncharacterized protein
STRING	Si000216m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein