PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025586.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 382aa    MW: 41747.7 Da    PI: 8.5978
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025586.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17110159155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Do025586.1 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159
                 78*******************......55************************998 PP
2AP233.79.2e-11202246149
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaa 49 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+aa ++
  Do025586.1 202 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAALRF 246
                 89********.7******...5...334336**********99******876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16110167IPR016177DNA-binding domain
PfamPF008471.6E-9110159IPR001471AP2/ERF domain
CDDcd000186.68E-11110166No hitNo description
SMARTSM003808.2E-31111173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-17111167IPR001471AP2/ERF domain
PROSITE profilePS5103217.728111167IPR001471AP2/ERF domain
CDDcd000183.82E-20202258No hitNo description
SuperFamilySSF541711.05E-11202257IPR016177DNA-binding domain
PfamPF008471.3E-6202246IPR001471AP2/ERF domain
SMARTSM003801.5E-24203262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-9203256IPR001471AP2/ERF domain
PROSITE profilePS5103210.771203256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVLDLNVASP EDSGTSSSSV LNSGDGGFRF GLLESPVDDD DCSGVAPGAS SGFMTRQLFP  60
PPPPTPPAEP ERAAAPVPVW QPRRAEDLAV AQRPVAPAKK TRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGL EADINFSLGD YEDDLKQMRN  180
WTKEEFVHIL RRQSTGFARG SSKYRGVTLH KCGRWEARMG QLLGKKYIYL GLFDSEVEAA  240
RAALRFNGRE AVTNFEPSSY NAGDAQPDTE NEANELTIPL VCASPRTSST ISPSALVLIS  300
LSWLLSAPSG ITNLFERTME RRPELGAQPF PTWAWQMQGT PHTPSHHSAA SSGFSAAAVG  360
TNGVAPSPQT PAPFPNHAFF FR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025586.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278380.0KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792820.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ84TB51e-140AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A1E5UQG60.0A0A1E5UQG6_9POAL; Floral homeotic protein APETALA 2
STRINGSi036068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-85AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]