 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do025546.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
NAC |
| Protein Properties |
Length: 248aa MW: 27161.4 Da PI: 6.0712 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do025546.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 108.6 | 7.6e-34 | 5 | 128 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
l+pGfrF Pt+eel+ +yL++k++g + ++e+vi+ +d++ ++Pw+Lp ++ ++ + s + ++a+g r++r+t sgyWka g+ v++++g+
Do025546.1 5 LAPGFRFYPTEEELLRFYLRNKLDGVRrGDIERVIPVADVCALDPWELPGTLLST--GIECISLE--REARGGRPSRTTPSGYWKAAGTPGLVYAADGR 99
579*********************9886677789***************655443..33334443..345799************************** PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127
+g+kkt+vfy+grap g kt+W ++ey+
Do025546.1 100 PIGTKKTMVFYRGRAPAGAKTKWKLNEYK 128
****************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MAELLAPGFR FYPTEEELLR FYLRNKLDGV RRGDIERVIP VADVCALDPW ELPGTLLSTG 60
IECISLEREA RGGRPSRTTP SGYWKAAGTP GLVYAADGRP IGTKKTMVFY RGRAPAGAKT 120
KWKLNEYKAL EDEDEYAAQA AAPAPTHALQ TRGEFTLCRL YTKSGCPWQF DRRPSAAAAA 180
AGGGSENAAA AVTFPNGEQT GQKRKRAAPP SDDSSSSDGD TQQLLRQRGT NEVLNDDMVD 240
WSQFLDWL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-25 | 5 | 163 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-25 | 5 | 163 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-25 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-25 | 5 | 163 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093626 | 2e-74 | FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence. |
