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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do025459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 301aa MW: 33209 Da PI: 6.4414 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.6 | 1.3e-14 | 99 | 150 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+++L+ Do025459.1 99 QRITHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 150 799***************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-14 | 97 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-15 | 97 | 154 | No hit | No description |
PROSITE profile | PS50888 | 16.12 | 98 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.68E-18 | 98 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-12 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-11 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MALLDAVVYP QPQGHFGYGH RDASYGLPWS DATGFSEWDP FLLASLVQNA EEFGEEVGSK 60 SSPDHDAAPS AVDPSPVTTT KRKRRRAKVV KNEEEIESQR ITHIAVERNR RRQMNEYLAV 120 LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQSLEVQR SLKEHNHNSS NPFAGFFSFP 180 QYSTTSASHG GAGNHTTKEE ASDRSPQSSW ITADIEASMV DGHTSVKVQA RRRPRQLLRL 240 AAGLQQLGLT TLHLNVSTAG TMVMYSFSLK VEDECKLSSV EEIAAAVHDI LGRVQEEAGF 300 S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 85 | KRKRRR |
2 | 81 | 85 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do025459.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983211.1 | 0.0 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 4e-71 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A1E5WHQ8 | 0.0 | A0A1E5WHQ8_9POAL; Transcription factor bHLH96 | ||||
STRING | Pavir.Ib02778.1.p | 1e-175 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-52 | bHLH family protein |
Publications ? help Back to Top | |||
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