PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025167.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 428aa    MW: 47596.6 Da    PI: 7.1485
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025167.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.2e-28242292155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k r+rWtpeLHe+Fv+av++L    +AtPk++ ++mkvkgLt++hvkSHLQkYR+
  Do025167.1 242 KSRMRWTPELHEHFVDAVNKL----EATPKAVQKVMKVKGLTIYHVKSHLQKYRT 292
                 68*******************....9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-26240293IPR009057Homeodomain-like
SuperFamilySSF466891.2E-14241294IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-19242293IPR006447Myb domain, plants
PfamPF002494.7E-10244291IPR001005SANT/Myb domain
PfamPF143794.7E-16349391IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
LMGTACSHTS TMDRLYNGRA PPCLSSATAV VPALSEVSCP RFPEQRSSYG ERELPFSSVT  60
SFGTSMAAHD AMSTCILASN FTSGHHANNE SPNVKLCSGP YVTEPSDPDT QLPSIHSSVL  120
GNPRPLMMDF SEVSEQICSN EEQLLGLFDS PTSVDFSNPR NVTAFGQQVQ DTITIDPNTC  180
IALQNEWFSS GSSMQLPKNT VDARSAAPKS YSYCHTQRSV PNPFNCDELC TDNLPSSKTA  240
PKSRMRWTPE LHEHFVDAVN KLEATPKAVQ KVMKVKGLTI YHVKSHLQKY RTVQHRPESS  300
DGQSVCLCVS GRRSNQADEV SVPQLNEVLF NIQLRFVVLS YRRGTGNVEG LMAQISIQKQ  360
LHEQLEIQRK LQLQVEEHSK YLEMIIAKQN ESLKRLGALP SFQDRSRRVL DDSKACERMV  420
STHSAEQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22242296260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025167.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315087.10.0protein PHOSPHATE STARVATION RESPONSE 2 isoform X1
TrEMBLA0A1E5V0330.0A0A1E5V033_9POAL; Protein PHOSPHATE STARVATION RESPONSE 1 (Fragment)
STRINGPavir.Aa00126.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.15e-41phosphate starvation response 1