PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025091.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 543aa    MW: 59189.4 Da    PI: 6.9472
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025091.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.41.3e-31451922127
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlskkge 98 
                 ppG++F Ptd elvv+yL++++++++l+l +++ + +i++++P +L +k+++ +e +w+fF++r++k++ g+r+nrat  +g W+atg+ +++   +g 
  Do025091.1  45 PPGYHFLPTDAELVVDYLRPRLANQQLPL-SIFFDERILDYHPARLIEKYREyGEGRWFFFTRRQRKHEGGNRPNRATPdNGHWNATGSPRQIRY-GGV 141
                 9****************************.778888**********8555442667********************87659*************9.*** PP

         NAM  99 lvglkktLvfy......................kgrapkgektdWvmheyr 127
                 lvg+ +tLvfy                      +g+a+kg kt+W+m ey+
  Do025091.1 142 LVGCVRTLVFYeasrrkkknhveaaglpplpeeEGKANKGAKTEWTMYEYE 192
                 ***********888887777777666666666669***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3838223IPR003441NAC domain
PROSITE profilePS5100536.01744223IPR003441NAC domain
PfamPF023653.7E-1845192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDDTPAAAAV ASAAAAAPTA AALGMTAAWP GATAAASSWF VLNFPPGYHF LPTDAELVVD  60
YLRPRLANQQ LPLSIFFDER ILDYHPARLI EKYREYGEGR WFFFTRRQRK HEGGNRPNRA  120
TPDNGHWNAT GSPRQIRYGG VLVGCVRTLV FYEASRRKKK NHVEAAGLPP LPEEEGKANK  180
GAKTEWTMYE YESLTSEEEF ETACGVDGNA NMDMIVLCTI QKKKQQKKEK QSEESKEGET  240
KKKRTKRKAK EEGGKKKRKK HTEEEDPVQV TLTETDAVAG EELAVYEAPT GLANYFNDDP  300
NANMLPHCFF SNTSPPVSTP PQETMMASAA NRGDSHISVH PSTAAMKNYS QFQASPLLAQ  360
ELLTYMNYAK ILAPLGGGGG NNCSSIMAPN MCTTMNLHSA SETAPPAEDL LLPTSWPPFN  420
EYHPPHPPPL QSTLKMVVAP PPEARRSCGG FGPGLSADSN NNGLAGDSHR LSTGIGYDHL  480
LAISWLQSQP FYGAGSTASA QAALLLHNKV SIHQQSSAAS MVVGSEEWWR CWCGTTQGSS  540
GQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-234222415166NO APICAL MERISTEM PROTEIN
1ut4_B4e-234222415166NO APICAL MERISTEM PROTEIN
1ut7_A4e-234222415166NO APICAL MERISTEM PROTEIN
1ut7_B4e-234222415166NO APICAL MERISTEM PROTEIN
4dul_A4e-234222415166NAC domain-containing protein 19
4dul_B4e-234222415166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241259KKRTKRKAKEEGGKKKRKK
2245259KRKAKEEGGKKKRKK
3255259KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo025091.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432492e-51AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5VMC10.0A0A1E5VMC1_9POAL; Uncharacterized protein
STRINGSi039216m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-24NAC-like, activated by AP3/PI