PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 317aa MW: 33305.1 Da PI: 9.1861

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do024794.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.6e-40	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnysl+qPryfCkaCrryWtkGG+lrnvPvGgg+rknk++ Do024794.1 31 QDQALNCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTKGGTLRNVPVGGGSRKNKQQ 90 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-34	32	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEVAAAAARN VKAKQAWQQQ AGGERKPRPQ QDQALNCPRC DSTNTKFCYY NNYSLTQPRY 60 FCKACRRYWT KGGTLRNVPV GGGSRKNKQQ RASAASSAPP TSSSSPSGSK KVNNITQQLM 120 MMPTASAMTT TADFSNVLPA FMSTGAGFEL PTSDHHQVSL PFVPLSLSSD PDGGSGAAPL 180 FMDMLRGGFL DSNGLALPFP PLSFGAMPIH GHGSTDQHAT QLVGPLQGVE EVKPMAAAAG 240 GGLQWLSPQH GSINHGGFAA GSAGGVVQKQ EEEVVGDGGR SSSNKNHNNV GGASGGSGRA 300 SEYYDWQRDL INSSSLI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do024794.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376388	2e-53	AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBank	AM084360	2e-53	AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	2e-90	dof zinc finger protein PBF
Swissprot	O24463	3e-59	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A1E5UTH7	0.0	A0A1E5UTH7_9POAL; Dof zinc finger protein PBF
STRING	Si019139m	1e-89	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-39	Dof family protein

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]