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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do024579.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
Trihelix |
| Protein Properties |
Length: 292aa MW: 32876.4 Da PI: 6.0538 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do024579.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 68.3 | 1.5e-21 | 14 | 83 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
+W++ e+ a +++r e+++++ ++k++k+lWe+vs++++ +gf r+p qCk+kw+nl +ryk +++ + +
Do024579.1 14 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEAVSARLQGQGFARTPDQCKSKWKNLVTRYKGTEAAAAS 83
7**************************************************************9988776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
LQPSASLERE RLPQWSHAET AAFLAVRAEL DHSFLTTKRN KALWEAVSAR LQGQGFARTP 60
DQCKSKWKNL VTRYKGTEAA AASAHPAPDA DPAAAAQQQA RQFPFHEEVR RIFDARVERA 120
QALERKRAKG KGVRHEDDEG CGGEGEDDDD EEEELEAEMG EDEAGSRVAA EARGGGGGAK 180
KRRRKQAAAA AAAAARVRSA DQGEVEAMLR EFMRRQVEME ERWMEAAEAR EAERRAREEE 240
WRNAMVALGE ERLALVRRWR DREEAWRTRA EEREERRHQL VAALLAKLGG DS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC130598 | 1e-97 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. |
| GenBank | AP014961 | 1e-97 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 1e-97 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
| GenBank | CT836356 | 1e-97 | CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence. |
