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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | CAMTA | ||||||||
Protein Properties | Length: 1073aa MW: 119993 Da PI: 5.7904 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 171.5 | 1.3e-53 | 21 | 138 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 lke ++rwl+++ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kk d ktv+E+he+LK g+++vl+cyYah+een +fqrr+y Do024553.1 21 LKEaQHRWLRPTEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKNDQKTVKEAHERLKSGSIDVLHCYYAHGEENINFQRRTY 119 45559********************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Lee++ +ivlvhyle+k Do024553.1 120 WMLEEDFMHIVLVHYLETK 138 ****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.32 | 17 | 143 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.4E-71 | 20 | 138 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.0E-48 | 23 | 136 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 7.6E-16 | 495 | 581 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 7.1E-5 | 495 | 581 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 4.4E-6 | 497 | 573 | IPR002909 | IPT domain |
Gene3D | G3DSA:1.25.40.20 | 8.1E-16 | 687 | 791 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.12E-15 | 688 | 789 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.54E-11 | 690 | 787 | No hit | No description |
PROSITE profile | PS50088 | 8.603 | 696 | 728 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 15.884 | 696 | 761 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.763 | 729 | 761 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0085 | 729 | 758 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.35E-8 | 889 | 941 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.086 | 890 | 912 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.407 | 891 | 920 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0034 | 892 | 911 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 913 | 935 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 914 | 938 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 916 | 935 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1073 aa Download sequence Send to blast |
MASAEARRLA VVPQLDIEQI LKEAQHRWLR PTEICEILKN YRNFRIAPEP PNRPPSGSLF 60 LFDRKVLRYF RKDGHNWRKK NDQKTVKEAH ERLKSGSIDV LHCYYAHGEE NINFQRRTYW 120 MLEEDFMHIV LVHYLETKGG KSSRARVNNN MIQEAAVDSP LSQLPSQTIE GESSLSGQAS 180 EYEEAESADI YSGGAGYHSF ARMQQHENGT GPVIDSSVFN SYTPASSIGN YQGLHAMTQN 240 TNFYPGNQHN SPLVLSGSST VVAMNGRANQ TDLSSWNPVI ELDNGPVQMP HLQFPVPPEQ 300 GTSTEGLGID YLTFDEVYSD GLSLKDIGAA GADGESFWQV CWSAIPYNYT YEICYRIHDS 360 MDLYNIMALH CFLKRHLTEF VAFQFTSATG DSSTTENSFL RPNDGSLEAA IGNPFLKTQS 420 SNLSDILKDS FKKTDSFTRW MSKELPEVED SQIQSSSGVY WSTEEADSII EASSREPLDQ 480 FTVSPMLSQD QLFSIVDFAP CWTYVGSKTK ILVTGSILNN SQDTERCKWS CMFGEVEVPA 540 KILPDGTLIC YSPLHKPGRV PFYITCSNRL ACSEVREFEF RPTVTPYMDA PSPHGATNKV 600 YFQIRLDKLL SLGPDEYQAT VSNPSLEMIE LSKKISSLMM SNDEWSNLLK LAVDNEPSTD 660 DQQDQFAEKL IKDKLHVWLL NKVGVGGKGP SVLDDEGQGV LHLAAALGYD WAIRPTLAAG 720 VNINFRDIHG WTALHWAAFC GRERTVVALI TLGAAPGALT DPSPDFPETT PADLASANGQ 780 KGISGFLAES SLTSHLQALN LKEANMAEIS GLPGIGDVTE RDSLQPPIGD SLGPVRNAAQ 840 AAARIYQVFR VQSFQRKEAA KYEDGKGGMS DERALSLLSV KPSKPGQLDP LHSAATRIQN 900 KFRGWKGRKE FLLIRQRIVK IQAHVRGHQV RKHYRKIVWS VGIVEKVILR WRRRGAGLRG 960 FRSSEGSAEG SSGGTSSSLL QDKPSRDDYD FLQEGRKQTE ERLQKALARV KSMAQYPEAR 1020 DQYQRILTVV SKMQESQAMQ EKMLEESAEM DDSYFMNELQ ELWDDDTPIP GYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024553.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793387.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
Swissprot | Q8GSA7 | 0.0 | CMTA3_ARATH; Calmodulin-binding transcription activator 3 | ||||
TrEMBL | A0A1E5VP76 | 0.0 | A0A1E5VP76_9POAL; Calmodulin-binding transcription activator 3 | ||||
STRING | Pavir.Ia02749.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |