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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do024495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 214aa MW: 24114.3 Da PI: 4.6606 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+EL vLCd++v ++ fs++g+++ y++ Do024495.1 9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDVDVGLVFFSERGRMFQYPN 59 79***********************************************85 PP | |||||||
2 | K-box | 62 | 2.3e-21 | 69 | 147 | 14 | 91 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 ++++ e+ kL+ e+e+L+ ++R + GedL+ L s+ eL +LeqqLe++l+k+R++K+ell++ ++elq k e+ ++ Do024495.1 69 QQEMIAEIGKLRHEYEQLEASLRAYTGEDLSALdSVDELDELEQQLESALSKVRARKDELLIDLTNELQLKVTETLTIK 147 689999***************************6689**********************************99876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.758 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-34 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-27 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.12E-35 | 2 | 66 | No hit | No description |
PRINTS | PR00404 | 8.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.061 | 69 | 154 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.3E-18 | 69 | 142 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRGKVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD VDVGLVFFSE RGRMFQYPNP 60 PTRLTLPLQQ EMIAEIGKLR HEYEQLEASL RAYTGEDLSA LDSVDELDEL EQQLESALSK 120 VRARKDELLI DLTNELQLKV TETLTIKGNA RHDAAVETEE VAEPLPPSPS FAYLLNVNET 180 SAASTMLQLW PQTDDDDDDV RGSSTPPPPR GLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-16 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do024495.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811394.1 | 1e-100 | MADS-box transcription factor 30-like | ||||
Swissprot | Q655V4 | 7e-46 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | A0A1E5VXD2 | 1e-154 | A0A1E5VXD2_9POAL; MADS-box transcription factor 30 (Fragment) | ||||
STRING | Pavir.J10823.1.p | 8e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-27 | MIKC_MADS family protein |