PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024171.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 179aa    MW: 19657 Da    PI: 4.67
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024171.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-203179355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++GVr+++ +g+++AeIrdps    rkr++lg+f+taeeAa+ ++aa+ +++g
  Do024171.1 31 FRGVRQRP-WGKYAAEIRDPSL---RKRVWLGTFDTAEEAARVYDAAAIRIRG 79
                89******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-413093IPR001471AP2/ERF domain
PROSITE profilePS5103223.5383087IPR001471AP2/ERF domain
PfamPF008478.3E-133179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-303187IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-223188IPR016177DNA-binding domain
PRINTSPR003675.7E-113142IPR001471AP2/ERF domain
CDDcd000183.95E-303486No hitNo description
PRINTSPR003675.7E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDSDDCRRVR ETDLLPPSAQ REGRGRRRLL FRGVRQRPWG KYAAEIRDPS LRKRVWLGTF  60
DTAEEAARVY DAAAIRIRGR RAVTNFPVPL SPSPLPSAAV SSASRTSLPP APSVASPEAE  120
SSTASAPSTQ SSSLVDADEE VTGLWFQEEP LELMEFCLPP APTGGQWEFG ELGDLDDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213191667ATERF1
3gcc_A1e-213191667ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo024171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284946e-40KJ728494.1 Zea mays clone pUT6799 AP2-EREBP transcription factor (EREB155) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703523.15e-46ethylene-responsive transcription factor ERF096-like
TrEMBLA0A1E5V4C01e-122A0A1E5V4C0_9POAL; Uncharacterized protein
STRINGPavir.J11205.1.p3e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-09cytokinin response factor 1