PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do023914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 62aa MW: 7119.61 Da PI: 10.8977 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.5 | 2.6e-21 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ en+s r vt+skRr gi KKA+ELS+LCd++ +++fs+t k Do023914.1 9 KKLENNSARVVTYSKRRSGIVKKAKELSILCDIDLILLMFSPTEK 53 5679**************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.623 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-27 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.93E-20 | 2 | 54 | No hit | No description |
PRINTS | PR00404 | 1.4E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-19 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MGRVKLKIKK LENNSARVVT YSKRRSGIVK KAKELSILCD IDLILLMFSP TEKPTICISE 60 RR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do023914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008677900.1 | 8e-30 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_008677901.1 | 8e-30 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_008677902.1 | 6e-30 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Refseq | XP_021317426.1 | 5e-30 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_021317427.1 | 5e-30 | agamous-like MADS-box protein AGL65 isoform X1 | ||||
Refseq | XP_021317428.1 | 4e-30 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q1PFA4 | 1e-22 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A1E5UX03 | 1e-35 | A0A1E5UX03_9POAL; Uncharacterized protein | ||||
STRING | Sb05g025970.1 | 1e-29 | (Sorghum bicolor) | ||||
STRING | GRMZM2G441115_P01 | 3e-30 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.1 | 6e-15 | AGAMOUS-like 30 |
Publications ? help Back to Top | |||
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