PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do023732.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 437aa MW: 49124 Da PI: 7.9036

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do023732.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.7	1.1e-12	44	68	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLH+rFv+av+qLGG+e Do023732.1 44 KPRLKWTPELHQRFVDAVNQLGGAE 68 79*********************87 PP
2	G2-like	49.1	1.3e-15	93	122	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkt+++lm+++gLtl+h+kSHLQkYRl Do023732.1 93 EATPKTVMRLMGIPGLTLYHLKSHLQKYRL 122 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-29	42	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-12	43	123	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	46	121	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	6.5E-9	93	123	IPR006447	Myb domain, plants
Pfam	PF14379	3.8E-10	192	217	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MYHQHQGPSE LFTTRTSFPM EQHLFLRGGN AQGDSGLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGAESK YNILIFSKYR DKLNSYISLH HPEATPKTVM RLMGIPGLTL YHLKSHLQKY 120 RLSKNLQAQA NVGTSKNAIG CTTIAERMPG TSAATMGSTN VIPQAENKVT LSVYKMDYCC 180 SESDLKLNWQ QVQRHLQLRI EAQGKYLQAV LEQAQETLGN KNLGPANLED AKIKISELVS 240 QVSNECFSNA ITDIKESSSV HRLEPKQIQF VESSTNNYLT AAEGFIKEHR LQHHGVLKAY 300 DDSSLFCRKG SHEHETQFAL NRSLSGRRMS HLQNEKGYSK AEFVYESDTE MAPEYITPQK 360 NGGGSTTSSA SGSKGRGEKP YLEEPNCTRQ AVEYPRESKL LDFEHSCSGK KLDLNTHNVD 420 DTDQAYRHFD LNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MYHQHQGPSE LFTTRTSFPM EQHLFLRGGN AQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAESK YNILIFSKYR DKLNSYISLH HPEATPKTVM RLMGIPGLTL YHLKSHLQKY  120
RLSKNLQAQA NVGTSKNAIG CTTIAERMPG TSAATMGSTN VIPQAENKVT LSVYKMDYCC  180
SESDLKLNWQ QVQRHLQLRI EAQGKYLQAV LEQAQETLGN KNLGPANLED AKIKISELVS  240
QVSNECFSNA ITDIKESSSV HRLEPKQIQF VESSTNNYLT AAEGFIKEHR LQHHGVLKAY  300
DDSSLFCRKG SHEHETQFAL NRSLSGRRMS HLQNEKGYSK AEFVYESDTE MAPEYITPQK  360
NGGGSTTSSA SGSKGRGEKP YLEEPNCTRQ AVEYPRESKL LDFEHSCSGK KLDLNTHNVD  420
DTDQAYRHFD LNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-15	44	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-15	44	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-15	44	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-15	44	124	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-15	43	124	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do023732.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC097175	1e-126	AC097175.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1119_H02, complete sequence.
GenBank	AP014961	1e-126	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-126	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805060.1	0.0	myb-related protein 2-like
Refseq	XP_025805061.1	0.0	myb-related protein 2-like
TrEMBL	A0A1E5WK93	0.0	A0A1E5WK93_9POAL; Myb-related protein 1
STRING	Pavir.J02359.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	3e-74	myb-related protein 1